Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

8q24.3

lncRNA

C8orf31 ( ENSG00000177335)

miRNA

hsa-miR-23a-5p (MIMAT0004496)

mRNA

APAF1 (ENSG00000120868)

Disease

CESC

FDR

1.83E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UUU    UA                            5 hsa-miR-23a-5p
             AGGG   GGG GUCCU           UGGGG    
             UCCC   CCC CAGGA           GCCCC    
target 5   C    UGG   G     UAGGGAUAGCA     A 3 C8orf31
Start: 1150  End: 1170
Energy: -34.5 kcal/mol
Align Score: 0.006604
miRNA  3 UUUA                          5 hsa-miR-23a-5p
              GGGUA GGGGUCCUU     GGGG    
              CCCGU CCCCAGGAG     CCCC    
target 5    A     G         CACCU    A 3 C8orf31
Start: 546  End: 566
Energy: -37.6 kcal/mol
Align Score: 0.000597
miRNA  3 U        A          G  G 5 hsa-miR-23a-5p
           UUA GGGU  GGGGUCCUU GG    
           GAU CCCG  CCCCAGGAG CU    
target 5 U   G    GG         G  G 3 C8orf31
Start: 208  End: 228
Energy: -32.7 kcal/mol
Align Score: 0.003942
miRNA  3 UUUA   UA               G 5 hsa-miR-23a-5p
              GGG     GGGGUCCUUGGG    
              CCC     CCCCAGGGACUC    
target 5    G   UGGCA            A 3 C8orf31
Start: 598  End: 618
Energy: -33.2 kcal/mol
Align Score: 0.007709
miRNA  3 UUU    UA                            5 hsa-miR-23a-5p
             AGGG   GGG GUCCU           UGGGG    
             UCCC   CCC CAGGA           GCCCC    
target 5   C    UGG   G     UAGGGAUAGCA     A 3 C8orf31
Start: 1106  End: 1126
Energy: -34.5 kcal/mol
Align Score: 0.008129

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for C8orf31

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-23a-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for APAF1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 8q24.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.