Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

11p15.5

lncRNA

H19 ( ENSG00000130600)

miRNA

hsa-miR-33b-3p (MIMAT0004811)

mRNA

HMGA2 (ENSG00000149948)

Disease

CESC

FDR

9.06E-3

Reported as biomarkers
15

Circulating
13

Drug resistent
52

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3      A     UG            U  C 5 hsa-miR-33b-3p
           CCCG    CG  AC   GGCUCCG GA    
           GGGC    GC  UG   CCGAGGC CU    
target 5 U    GCCG  UG  UGC          C 3 H19
Start: 622  End: 642
Energy: -34.1 kcal/mol
Align Score: 0.003423
miRNA  3 C                                               5 hsa-miR-33b-3p
           CCGACGU          GACG              GCUCCGUGAC    
           GGCUGCA          CUGC              CGAGGCACUG    
target 5 A       GGGGCUCGGC    GGGCGCCGGUCCCA          C 3 H19
Start: 338  End: 358
Energy: -37.3 kcal/mol
Align Score: 0.002942
miRNA  3 C                                               5 hsa-miR-33b-3p
           CCGACGU          GACG              GCUCCGUGAC    
           GGCUGCA          CUGC              CGAGGCACUG    
target 5 A       GGGGCUCGGC    GGGCGCCGGUCCCA          C 3 H19
Start: 581  End: 601
Energy: -37.3 kcal/mol
Align Score: 0.003255
miRNA  3 C                                               5 hsa-miR-33b-3p
           CCGACGU          GACG              GCUCCGUGAC    
           GGCUGCA          CUGC              CGAGGCACUG    
target 5 A       GGGGCUCGGC    GGGCGCCGGUCCCA          C 3 H19
Start: 918  End: 938
Energy: -37.3 kcal/mol
Align Score: 0.002992
miRNA  3      A   GA  G            5 hsa-miR-33b-3p
           CCCG CGU  CG C UCCGUGAC    
           GGGC GCG  GC G AGGCACUG    
target 5 C    G   A   G G        G 3 H19
Start: 555  End: 575
Energy: -35.7 kcal/mol
Align Score: 0.004576

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for H19

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-33b-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for HMGA2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 11p15.5

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.