Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2p13.3

lncRNA

PCBP1-AS1 ( ENSG00000179818)

miRNA

hsa-miR-324-5p (MIMAT0000761)

mRNA

ETS1 (ENSG00000134954)

Disease

COAD

FDR

1.32E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3         A                            5 hsa-miR-324-5p
           UGUGGUU      CGGGA UCCC  CU   ACGC    
           GCACUGA      GCCCU AGGG  GA   UGCG    
target 5 A       CUCUGG     C    UC  GGU    G 3 PCBP1-AS1
Start: 266  End: 286
Energy: -30.8 kcal/mol
Align Score: 0.00946
miRNA  3 U    UUAC                     C 5 hsa-miR-324-5p
           GUGG     GGGAUCCCCU       ACG    
           CGCC     CUCUAGGGGA       UGC    
target 5 U    UCUCU          CCAGAUG   A 3 PCBP1-AS1
Start: 219  End: 239
Energy: -30.2 kcal/mol
Align Score: 0.007594
miRNA  3        U                               5 hsa-miR-324-5p
           UGUGGU      ACGGGA     UCCCC   UACGC    
           ACAUUA      UGCCCU     AGGGG   GUGCG    
target 5 G      UUUUCC      ACAUG     CUC     C 3 PCBP1-AS1
Start: 136  End: 156
Energy: -31.9 kcal/mol
Align Score: 0.005005
miRNA  3         A         GA                 5 hsa-miR-324-5p
           UGUGGUU       CGG  UCCCC     UACGC    
           GCACCGG       GCC  AGGGG     GUGCG    
target 5 A       CAGGGAG   G      CAGCA     G 3 PCBP1-AS1
Start: 459  End: 479
Energy: -32.3 kcal/mol
Align Score: 0.004416
miRNA  3        U                               5 hsa-miR-324-5p
           UGUGGU      ACGGGA     UCCCC   UACGC    
           ACAUUA      UGCCCU     AGGGG   GUGCG    
target 5 G      UUUUCC      ACAUG     CUC     C 3 PCBP1-AS1
Start: 131  End: 151
Energy: -31.9 kcal/mol
Align Score: 0.005277

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PCBP1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-324-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ETS1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.