Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

7p13

lncRNA

SNHG15 ( ENSG00000232956)

miRNA

hsa-miR-324-5p (MIMAT0000761)

mRNA

MTFR1 (ENSG00000066855)

Disease

COAD

FDR

1.34E-4

Reported as biomarkers
1

Circulating

1

Drug resistent

10

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
NA

                         
NA

TargetScan target site prediction
                                           
NA

                         
NA

RNAbybrid target site prediction
miRNA  3   G   UUA                  C 5 hsa-miR-324-5p
U UGG CGGGAUCC CCUACG
A ACC GCCCUAGG GGGUGC
target 5 C G UCUG UUU C 3 SNHG15
Start: 841  End: 861
Energy: -33.9 kcal/mol
Align Score: 0.005023
miRNA  3   G   UUA                  C 5 hsa-miR-324-5p
U UGG CGGGAUCC CCUACG
A ACC GCCCUAGG GGGUGC
target 5 C G UCUG UUU C 3 SNHG15
Start: 593  End: 613
Energy: -33.9 kcal/mol
Align Score: 0.003485
miRNA  3   G   UUA                  C 5 hsa-miR-324-5p
U UGG CGGGAUCC CCUACG
A ACC GCCCUAGG GGGUGC
target 5 C G UCUG UUU C 3 SNHG15
Start: 815  End: 835
Energy: -33.9 kcal/mol
Align Score: 0.004845
miRNA  3   G   UUA                  C 5 hsa-miR-324-5p
U UGG CGGGAUCC CCUACG
A ACC GCCCUAGG GGGUGC
target 5 C G UCUG UUU C 3 SNHG15
Start: 580  End: 600
Energy: -33.9 kcal/mol
Align Score: 0.003357
miRNA  3   G   UUA                  C 5 hsa-miR-324-5p
U UGG CGGGAUCC CCUACG
A ACC GCCCUAGG GGGUGC
target 5 C G UCUG UUU C 3 SNHG15
Start: 430  End: 450
Energy: -33.9 kcal/mol
Align Score: 0.002156

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG15

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-324-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for MTFR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 7p13

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.