Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.11

lncRNA

LINC00963 ( ENSG00000204054)

miRNA

hsa-miR-940 (MIMAT0004983)

mRNA

DUSP1 (ENSG00000120129)

Disease

COAD

FDR

3.46E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 C  C   CC             A 5 hsa-miR-940
           CC UCG    CCCGGGACGGA    
           GG AGC    GGGCUCUGCCU    
target 5 A  C   ACCU           G 3 LINC00963
Start: 926  End: 946
Energy: -33 kcal/mol
Align Score: 0.009358
miRNA  3        GC  C         AA 5 hsa-miR-940
           CCCCUC  CC CGGGAC GG     
           GGGGAG  GG GCCCUG UC     
target 5 G      UU  A      G  A  3 LINC00963
Start: 601  End: 621
Energy: -35.1 kcal/mol
Align Score: 0.006359
miRNA  3        GC  C         AA 5 hsa-miR-940
           CCCCUC  CC CGGGAC GG     
           GGGGAG  GG GCCCUG UC     
target 5 G      UU  A      G  A  3 LINC00963
Start: 234  End: 254
Energy: -35.1 kcal/mol
Align Score: 0.002845
miRNA  3        GC  C         AA 5 hsa-miR-940
           CCCCUC  CC CGGGAC GG     
           GGGGAG  GG GCCCUG UC     
target 5 G      UU  A      G  A  3 LINC00963
Start: 39  End: 59
Energy: -35.1 kcal/mol
Align Score: 0.00548
miRNA  3 C               G        GA   AA 5 hsa-miR-940
           CCC          UC CCCC CGG  CGG     
           GGG          AG GGGG GCC  GCC     
target 5 U   CUGUCCUUCA  G    A   A    A  3 LINC00963
Start: 30  End: 50
Energy: -30.6 kcal/mol
Align Score: 0.0042

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00963

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-940

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for DUSP1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.