Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9q34.11

lncRNA

LINC00963 ( ENSG00000204054)

miRNA

hsa-miR-1292-5p (MIMAT0005943)

mRNA

SOX4 (ENSG00000124766)

Disease

HNSC

FDR

3.05E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3       A                               A         5 hsa-miR-1292-5p
           GUCGC GA              CGGCCUU   GGGCA    GGGU    
           CAGUG CU              GCCGGAA   UCCGU    CCCA    
target 5 A        GGCCUUGCCCGGGC       GGU     GAGG    G 3 LINC00963
Start: 105  End: 125
Energy: -35.2 kcal/mol
Align Score: 0.005302
miRNA  3                   A          C  UG       GU 5 hsa-miR-1292-5p
           GUCG          CAG        CGG CU  GGCAAGG     
           CAGC          GUU        GCC GA  CCGUUCC     
target 5 C    CUGUCCUCCU   GCCUGCAG   A  UG       A  3 LINC00963
Start: 187  End: 207
Energy: -32.3 kcal/mol
Align Score: 0.004006
miRNA  3      CA       C              U 5 hsa-miR-1292-5p
           GUCG    GACGG  CUUGGG CAAGGG    
           CAGC    CUGCC  GAGCCC GUUUCC    
target 5 G    UUUG     CU      U      U 3 LINC00963
Start: 143  End: 163
Energy: -36.4 kcal/mol
Align Score: 0.000844
miRNA  3 G        A  G                   5 hsa-miR-1292-5p
           UCGC  AG CG CCUUGG  GC AAGGGU    
           GGCG  UC GC GGAGCU  UG UUCCCA    
target 5 G    GC  A  A      GC  C      G 3 LINC00963
Start: 20  End: 40
Energy: -31.9 kcal/mol
Align Score: 0.006466
miRNA  3 G    AG              CA   GU 5 hsa-miR-1292-5p
           UCGC     ACGGCCUUGGG  AGG     
           GGUG     UGCCGGAAUCU  UCC     
target 5 U    GGACA                A  3 LINC00963
Start: 97  End: 117
Energy: -32.7 kcal/mol
Align Score: 0.003412

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00963

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1292-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SOX4

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9q34.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.