Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

22q13.2

lncRNA

NDUFA6-AS1 ( ENSG00000237037)

miRNA

hsa-miR-328-3p (MIMAT0000752)

mRNA

PLCE1 (ENSG00000138193)

Disease

HNSC

FDR

8.43E-11

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 U         UC         UC 5 hsa-miR-328-3p
           GCCUUCCCG   UCUCCCGG     
           UGGAGGGGC   AGGGGGCC     
target 5 C         CCA        C  3 NDUFA6-AS1
Start: 1334  End: 1354
Energy: -37.5 kcal/mol
Align Score: 0.002309
miRNA  3      U                                          5 hsa-miR-328-3p
           UGCC UCCCG              UC UC        UCCCGGUC    
           GCGG GGGGC              GG GG        AGGGCCAG    
target 5 U    U     UUGUCCUGCCGCCU  C  CUUUCUGC        G 3 NDUFA6-AS1
Start: 11  End: 31
Energy: -32.2 kcal/mol
Align Score: 0.007124
miRNA  3 UG                                5 hsa-miR-328-3p
            CCU      UCCCGUCUCUCC    CGGUC    
            GGA      AGGGCAGGGAGG    GCUGG    
target 5  G   GGCAGC            CAGU     A 3 NDUFA6-AS1
Start: 402  End: 422
Energy: -35.5 kcal/mol
Align Score: 0.001749
miRNA  3 UG                                5 hsa-miR-328-3p
            CCU      UCCCGUCUCUCC    CGGUC    
            GGA      AGGGCAGGGAGG    GCUGG    
target 5  G   GGCAGC            CAGU     A 3 NDUFA6-AS1
Start: 474  End: 494
Energy: -35.5 kcal/mol
Align Score: 0.001907
miRNA  3      U    C   U          C 5 hsa-miR-328-3p
           UGCC  UCC GUC   CUCCCGGU    
           AUGG  AGG CAG   GGGGGCUA    
target 5 G    UC   C   UGU        A 3 NDUFA6-AS1
Start: 158  End: 178
Energy: -30.2 kcal/mol
Align Score: 0.005424

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for NDUFA6-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-328-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for PLCE1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 22q13.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.