Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

3p25.1

lncRNA

FGD5-AS1 ( ENSG00000225733)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

HNSC

FDR

1.80E-26

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3   UG     CUC               5 hsa-miR-939-5p
           G  GGGGU   GGAGUCGAGGGGU    
           C  CCCCG   CUUCAGCUCCCCG    
target 5 C UG     CUU             A 3 FGD5-AS1
Start: 730  End: 750
Energy: -42.4 kcal/mol
Align Score: 0.000342
miRNA  3 G                                 AG       GU 5 hsa-miR-939-5p
           UGGGGG               U      CUCGG  UCGAGGG     
           GCCCCC               G      GAGCC  GGCUCCC     
target 5 G      GGCGCGGAGGGCAGG CGCGGG     CG       G  3 FGD5-AS1
Start: 42  End: 62
Energy: -34.6 kcal/mol
Align Score: 0.007518
miRNA  3                                   GAG         5 hsa-miR-939-5p
           GUGGGGGU              CUCGG  AGUC      GGGU    
           CACCCCCA              GGGCC  UCAG      CCCG    
target 5 C        CCCUUGCGCCGGCC     GG    GGGGAA    C 3 FGD5-AS1
Start: 275  End: 295
Energy: -35 kcal/mol
Align Score: 0.007483
miRNA  3                   AG            5 hsa-miR-939-5p
           GUGGGGG  UCUC  GG   UCGAGGGGU    
           CGCCCCU  GGGG  CC   AGCUCCUCG    
target 5 C       CU    AA  GCG         C 3 FGD5-AS1
Start: 211  End: 231
Energy: -36.7 kcal/mol
Align Score: 0.003386

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for FGD5-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3p25.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.