Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

18q21.1

lncRNA

SNHG22 ( ENSG00000267322)

miRNA

hsa-miR-1247-5p (MIMAT0005899)

mRNA

SOX9 (ENSG00000125398)

Disease

KIRP

FDR

1.98E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'  AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                         ||||||| 
target 5' GCAGCGGGUGAGGCUGGACGGGA SNHG22
Start: 290  End: 297
Site type: 8mer-1a
Context++ Score: -0.491
miRNA  3'  AGGCCCCUGCUUGCCCUGCCCA 5' hsa-miR-1247-5p
                         ||||||| 
target 5' GCAGCGGGUGAGGCUGGACGGGA SNHG22
Start: 290  End: 297
Site type: 8mer-1a
Context++ Score: -0.491
RNAbybrid target site prediction
miRNA  3' AG                   G   A 5' hsa-miR-1247-5p
            GCCC CU   GCUUGCCCU CCC    
            CGGG GA   UGGACGGGA GGG    
target 5'  G    U  GGC             A 3' SNHG22
Start: 278  End: 298
Energy: -33.5 kcal/mol
Align Score: 0.00181
miRNA  3' A  C   UG       U           A 5' hsa-miR-1247-5p
           GG CCC  CUUGCCC        GCCC    
           CC GGG  GGGCGGG        UGGG    
target 5' C  A   UG       CAGCGCCC    A 3' SNHG22
Start: 555  End: 575
Energy: -34.5 kcal/mol
Align Score: 0.006895
miRNA  3 AG                   G   A 5 hsa-miR-1247-5p
            GCCC CU   GCUUGCCCU CCC    
            CGGG GA   UGGACGGGA GGG    
target 5  G    U  GGC             A 3 SNHG22
Start: 278  End: 298
Energy: -33.5 kcal/mol
Align Score: 0.00181
miRNA  3 A  C   UG       U           A 5 hsa-miR-1247-5p
           GG CCC  CUUGCCC        GCCC    
           CC GGG  GGGCGGG        UGGG    
target 5 C  A   UG       CAGCGCCC    A 3 SNHG22
Start: 555  End: 575
Energy: -34.5 kcal/mol
Align Score: 0.006895

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG22

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1247-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SOX9

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 18q21.1

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.