Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p35.3

lncRNA

SNHG12 ( ENSG00000197989)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

KIRP

FDR

2.02E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
10

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UG                   A          U   A 5 hsa-miR-1254
            ACGUCC            G GG UCGAAGG CCG    
            UGCAGG            C CC AGUUUCC GGC    
target 5  A      GGACCUGGUUGC C  A       U   A 3 SNHG12
Start: 193  End: 213
Energy: -30.9 kcal/mol
Align Score: 0.005994
miRNA  3       UC          AG     A 5 hsa-miR-1254
           UGACG  CGAGG UCGA  GUCCG    
           GCUGC  GCUCU GGCU  CAGGC    
target 5 C            G    GA     G 3 SNHG12
Start: 225  End: 245
Energy: -32.5 kcal/mol
Align Score: 0.006007
miRNA  3 U                       U   A 5 hsa-miR-1254
           GACGUCCGA GG    UCGAAGG CCG    
           CUGCAGGUU CC    AGUUUCC GGC    
target 5 U         G  CCCA       U   A 3 SNHG12
Start: 1031  End: 1051
Energy: -37.9 kcal/mol
Align Score: 0.002438
miRNA  3       UC          AG     A 5 hsa-miR-1254
           UGACG  CGAGG UCGA  GUCCG    
           GCUGC  GCUCU GGCU  CAGGC    
target 5 C            G    GA     G 3 SNHG12
Start: 263  End: 283
Energy: -32.5 kcal/mol
Align Score: 0.009834
miRNA  3 U        AGG   AA         5 hsa-miR-1254
           GACGUCCG   UCG  GGUCCGA    
           UUGCAGGC   GGC  CCGGGUU    
target 5 G        A     GG       U 3 SNHG12
Start: 289  End: 309
Energy: -35.3 kcal/mol
Align Score: 0.006957

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG12

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p35.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.