Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p36.12

lncRNA

LINC00339 ( ENSG00000218510)

miRNA

hsa-miR-23a-5p (MIMAT0004496)

mRNA

GJA1 (ENSG00000152661)

Disease

KIRP

FDR

2.12E-3

Reported as biomarkers
1

Circulating
0

Drug resistent
3

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UU      A   G        G 5 hsa-miR-23a-5p
            UAGGGU GGG UCCUUGGG    
            GUCCUG CCC AGGAGCUC    
target 5  U          G        A 3 LINC00339
Start: 588  End: 608
Energy: -31.7 kcal/mol
Align Score: 0.008342
miRNA  3 UUUA    A                      5 hsa-miR-23a-5p
              GGGU GGGGUCCUUG       GGG    
              CCUG CCCCAGGAGC       CCC    
target 5    G               GGGGAGU   U 3 LINC00339
Start: 217  End: 237
Energy: -31.2 kcal/mol
Align Score: 0.009667
miRNA  3 UUU           UCCUU      5 hsa-miR-23a-5p
             AGG GUAGGGG     GGGG    
             UCC CGUCCCC     CCCC    
target 5   U   U       CGCUC    G 3 LINC00339
Start: 89  End: 109
Energy: -30.2 kcal/mol
Align Score: 0.00925
miRNA  3         UA    UC         5 hsa-miR-23a-5p
           UUUAGGG  GGGG  CUUGGGG    
           AAGUCCC  CCCU  GAGCCUC    
target 5 C       CG    CC       A 3 LINC00339
Start: 476  End: 496
Energy: -35.6 kcal/mol
Align Score: 0.002483
miRNA  3 UU      A   G        G 5 hsa-miR-23a-5p
            UAGGGU GGG UCCUUGGG    
            GUCCUG CCC AGGAGCUC    
target 5  U          G        A 3 LINC00339
Start: 653  End: 673
Energy: -31.7 kcal/mol
Align Score: 0.00788

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00339

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-23a-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for GJA1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p36.12

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.