Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

9p13.2

lncRNA

EBLN3P ( ENSG00000281649)

miRNA

hsa-miR-23b-5p (MIMAT0004587)

mRNA

TGFBR2 (ENSG00000163513)

Disease

KIRP

FDR

3.35E-13

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' uuuAGUCGUACGGUCCUUGGGu 5' hsa-miR-23b-5p
             ||| ||||  |||||||| 
target 5' tgtTCATCATG-GAGGAACCCa 3' EBLN3P
Start: 732  End: 752
Energy: -23.34 kcal/mol
Align Score: 165
miRNA  3' uuuAGUCGUACGGUCCUUGGGu 5' hsa-miR-23b-5p
             ||| ||||  |||||||| 
target 5' tgtTCATCATG-GAGGAACCCa 3' EBLN3P
Start: 179  End: 199
Energy: -23.34 kcal/mol
Align Score: 165
miRNA  3' uuuAGUCGUACGGUCCUUGGGu 5' hsa-miR-23b-5p
             ||| ||||  |||||||| 
target 5' tgtTCATCATG-GAGGAACCCa 3' EBLN3P
Start: 156  End: 176
Energy: -23.34 kcal/mol
Align Score: 165
miRNA  3' uuuAGUCGUACGGUCCUUGGGu 5' hsa-miR-23b-5p
             ||| ||||  |||||||| 
target 5' tgtTCATCATG-GAGGAACCCa 3' EBLN3P
Start: 146  End: 166
Energy: -23.34 kcal/mol
Align Score: 165
miRNA  3' uuuAGUCGUACGGUCCUUGGGu 5' hsa-miR-23b-5p
             ||| ||||  |||||||| 
target 5' tgtTCATCATG-GAGGAACCCa 3' EBLN3P
Start: 670  End: 690
Energy: -23.34 kcal/mol
Align Score: 165
TargetScan target site prediction
miRNA  3'   UUUAGUCGUACGGUCCUUGGGU 5' hsa-miR-23b-5p
                   ||||   ||||||| 
target 5' AUUGUUCAUCAUGGA-GGAACCCA EBLN3P
Start: 192  End: 199
Site type: 8mer-1a
Context++ Score: -0.474
miRNA  3'   UUUAGUCGUACGGUCCUUGGGU 5' hsa-miR-23b-5p
                   ||||   ||||||| 
target 5' AUUGUUCAUCAUGGA-GGAACCCA EBLN3P
Start: 169  End: 176
Site type: 8mer-1a
Context++ Score: -0.488
miRNA  3'   UUUAGUCGUACGGUCCUUGGGU 5' hsa-miR-23b-5p
                   ||||   ||||||| 
target 5' AUUGUUCAUCAUGGA-GGAACCCA EBLN3P
Start: 159  End: 166
Site type: 8mer-1a
Context++ Score: -0.482
miRNA  3'   UUUAGUCGUACGGUCCUUGGGU 5' hsa-miR-23b-5p
                   ||||   ||||||| 
target 5' AUUGUUCAUCAUGGA-GGAACCCA EBLN3P
Start: 683  End: 690
Site type: 8mer-1a
Context++ Score: -0.454
miRNA  3'   UUUAGUCGUACGGUCCUUGGGU 5' hsa-miR-23b-5p
                   ||||   ||||||| 
target 5' AUUGUUCAUCAUGGA-GGAACCCA EBLN3P
Start: 192  End: 199
Site type: 8mer-1a
Context++ Score: -0.474
RNAbybrid target site prediction
miRNA  3' UUU                                        5' hsa-miR-23b-5p
             AGUCGU           ACGG        UCCUUGGGU    
             UCAGCA           UGUU        AGGAACCCA    
target 5'   U      AUCAAGACCAU    CAUCAUGG         U 3' EBLN3P
Start: 138  End: 158
Energy: -28.5 kcal/mol
Align Score: 0.008697
miRNA  3 UUU                                        5 hsa-miR-23b-5p
             AGUCGU           ACGG        UCCUUGGGU    
             UCAGCA           UGUU        AGGAACCCA    
target 5   U      AUCAAGACCAU    CAUCAUGG         U 3 EBLN3P
Start: 138  End: 158
Energy: -28.5 kcal/mol
Align Score: 0.008697

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for EBLN3P

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-23b-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for TGFBR2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 9p13.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.