Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

20q11.23

lncRNA

SNHG17 ( ENSG00000196756)

miRNA

hsa-miR-328-3p (MIMAT0000752)

mRNA

KCNH2 (ENSG00000055118)

Disease

KIRP

FDR

5.21E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 U   UU                  G     5 hsa-miR-328-3p
           GCC       CCCGU CUCUCCC GUC    
           UGG       GGGCA GAGAGGG CAG    
target 5 G   UGUUUGU     C       G   A 3 SNHG17
Start: 214  End: 234
Energy: -36 kcal/mol
Align Score: 0.000929
miRNA  3 U   UU                  G     5 hsa-miR-328-3p
           GCC       CCCGU CUCUCCC GUC    
           UGG       GGGCA GAGAGGG CAG    
target 5 G   UGUUUGU     C       G   A 3 SNHG17
Start: 670  End: 690
Energy: -36 kcal/mol
Align Score: 0.002222
miRNA  3 U   UU                  G     5 hsa-miR-328-3p
           GCC       CCCGU CUCUCCC GUC    
           UGG       GGGCA GAGAGGG CAG    
target 5 G   UGUUUGU     C       G   A 3 SNHG17
Start: 582  End: 602
Energy: -36 kcal/mol
Align Score: 0.001949
miRNA  3 UG      C         C        5 hsa-miR-328-3p
            CCUUCC    GUCUCU CCGGUC    
            GGAAGG    CAGAGA GGUCAG    
target 5  G      CGGC             G 3 SNHG17
Start: 221  End: 241
Energy: -33.2 kcal/mol
Align Score: 0.003652
miRNA  3 UG      C         C        5 hsa-miR-328-3p
            CCUUCC    GUCUCU CCGGUC    
            GGAAGG    CAGAGA GGUCAG    
target 5  G      CGGC             G 3 SNHG17
Start: 201  End: 221
Energy: -33.2 kcal/mol
Align Score: 0.002914

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG17

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-328-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for KCNH2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 20q11.23

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.