Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

6q21

lncRNA

TRAF3IP2-AS1 ( ENSG00000231889)

miRNA

hsa-miR-744-5p (MIMAT0004945)

mRNA

ARHGAP5 (ENSG00000100852)

Disease

KIRP

FDR

9.53E-10

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'   ACGACAAUCGGGAUCGGGGCGU 5' hsa-miR-744-5p
                          ||||||| 
target 5'  UCGUUGGUUUCCUCGGCCCCGCA TRAF3IP2-AS1
Start: 445  End: 452
Site type: 8mer-1a
Context++ Score: -0.423
RNAbybrid target site prediction
miRNA  3       AA                                      5 hsa-miR-744-5p
           ACGAC  UCGGG      AU               CGGGGCGU    
           UGCUG  GGCCU      UA               GCCCUGCA    
target 5 C     GA     CAUAAA  UUCUAGGGCUACAAU        A 3 TRAF3IP2-AS1
Start: 429  End: 449
Energy: -32 kcal/mol
Align Score: 0.004687
miRNA  3       AAU                       G        5 hsa-miR-744-5p
           ACGAC     CGGGA           UCGGG    CGU    
           UGCUG     GCCCU           GGCUC    GCA    
target 5 A     GCAGU     GGGUCAUCUCA     AUCA   A 3 TRAF3IP2-AS1
Start: 287  End: 307
Energy: -30.9 kcal/mol
Align Score: 0.00745
miRNA  3 A    AAU     AU           U 5 hsa-miR-744-5p
           CGAC    CGGG      CGGGGCG    
           GCUG    GCUC      GCCUCGC    
target 5 A    CGAU    ACACUU       C 3 TRAF3IP2-AS1
Start: 21  End: 41
Energy: -28.8 kcal/mol
Align Score: 0.008131
miRNA  3 ACGA                       5 hsa-miR-744-5p
              CAAUCG  GGA UCGGGGCGU    
              GUUGGU  CCU GGCCCCGCA    
target 5    C      UU   C         G 3 TRAF3IP2-AS1
Start: 431  End: 451
Energy: -34.6 kcal/mol
Align Score: 0.003395
miRNA  3       AA                                      5 hsa-miR-744-5p
           ACGAC  UCGGG      AU               CGGGGCGU    
           UGCUG  GGCCU      UA               GCCCUGCA    
target 5 C     GA     CAUAAA  UUCUAGGGCUACAAU        A 3 TRAF3IP2-AS1
Start: 315  End: 335
Energy: -32 kcal/mol
Align Score: 0.003454

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for TRAF3IP2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-744-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ARHGAP5

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 6q21

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.