Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p11.2

lncRNA

LRRC75A-AS1 ( ENSG00000175061)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

CSNK2A1 (ENSG00000101266)

Disease

KIRP

FDR

3.29E-12

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                          C        5 hsa-miR-760
           AGGGGUGU        CUGGGUCU    GGC    
           UCCCCGCG        GACCCAGA    CCG    
target 5 C        CGUGUUGU        AUUC   G 3 LRRC75A-AS1
Start: 14  End: 34
Energy: -34.4 kcal/mol
Align Score: 0.001734
miRNA  3        GUC      U   C 5 hsa-miR-760
           AGGGGU   UGGGUC CGG    
           UCCUCA   ACCCAG GCC    
target 5 A      AUC          U 3 LRRC75A-AS1
Start: 518  End: 538
Energy: -30.1 kcal/mol
Align Score: 0.009389
miRNA  3 A   G          G          5 hsa-miR-760
           GGG UGUC    UG GUCUCGGC    
           CCU GCAG    GC CGGGGCCG    
target 5 G   G    GGCA  G        A 3 LRRC75A-AS1
Start: 220  End: 240
Energy: -31.4 kcal/mol
Align Score: 0.005324
miRNA  3 A                            C 5 hsa-miR-760
           GGGGUGUC         UGG GUCUCGG    
           CUCCACAG         ACC CAGAGCC    
target 5 C        CUGGGCCCC   U       U 3 LRRC75A-AS1
Start: 363  End: 383
Energy: -33.9 kcal/mol
Align Score: 0.003498
miRNA  3 A               G              5 hsa-miR-760
           GGGGUGUC     UG     GUCUCGGC    
           CUCCACAG     GC     CAGAGCCG    
target 5 A        UUUCU  AACAA        G 3 LRRC75A-AS1
Start: 510  End: 530
Energy: -33.6 kcal/mol
Align Score: 0.002353

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LRRC75A-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CSNK2A1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.