Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17q21.31

lncRNA

LINC00910 ( ENSG00000188825)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

KIRP

FDR

2.34E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' guGGGGGUCUCGGAGUCGAGGGGu 5' hsa-miR-939-5p
            ||:||||: |:|| |||:||| 
target 5' ctCCTCCAGGCCTTCTGCTTCCCt 3' LINC00910
Start: 518  End: 541
Energy: -35.7 kcal/mol
Align Score: 166
miRNA  3' gugGGGGUCUCGGAGUCGAGGGGu 5' hsa-miR-939-5p
             |:||  |||| | ||||||| 
target 5' gaaCTCC--AGCCCCTGCTCCCCg 3' LINC00910
Start: 493  End: 514
Energy: -32.4 kcal/mol
Align Score: 162
TargetScan target site prediction
miRNA  3'  GUGGGGGUCUCGGAGUCGAGGGGU 5' hsa-miR-939-5p
                           ||||||| 
target 5'   GUCCUUAAAAAGUCUGCUCCCCA LINC00910
Start: 2375  End: 2382
Site type: 8mer-1a
Context++ Score: -0.532
miRNA  3'  GUGGGGGUCUCGGAGUCGAGGGGU 5' hsa-miR-939-5p
                           ||||||| 
target 5'   GUCCUUAAAAAGUCUGCUCCCCA LINC00910
Start: 2375  End: 2382
Site type: 8mer-1a
Context++ Score: -0.532
RNAbybrid target site prediction
miRNA  3'                  AG        U 5' hsa-miR-939-5p
           GUGGGGGUCU   CGG  UCGAGGGG    
           CACCUCUGGA   GCC  GGCUUCCC    
target 5' G          GGU   CA        U 3' LINC00910
Start: 301  End: 321
Energy: -37.4 kcal/mol
Align Score: 0.001654
miRNA  3'           U        U       U 5' hsa-miR-939-5p
           GUGGGGGUC    CGGAG CGAGGGG    
           CGCCCUCGG    GUUUC GCUCCCU    
target 5' G         CUCC     U       C 3' LINC00910
Start: 267  End: 287
Energy: -38.3 kcal/mol
Align Score: 0.000477
miRNA  3'                  AG        U 5' hsa-miR-939-5p
           GUGGGGGUCU   CGG  UCGAGGGG    
           CACCUCUGGA   GCC  GGCUUCCC    
target 5' G          GGU   CA        U 3' LINC00910
Start: 422  End: 442
Energy: -37.4 kcal/mol
Align Score: 0.000664
miRNA  3                  AG        U 5 hsa-miR-939-5p
           GUGGGGGUCU   CGG  UCGAGGGG    
           CACCUCUGGA   GCC  GGCUUCCC    
target 5 G          GGU   CA        U 3 LINC00910
Start: 301  End: 321
Energy: -37.4 kcal/mol
Align Score: 0.001654
miRNA  3           U        U       U 5 hsa-miR-939-5p
           GUGGGGGUC    CGGAG CGAGGGG    
           CGCCCUCGG    GUUUC GCUCCCU    
target 5 G         CUCC     U       C 3 LINC00910
Start: 267  End: 287
Energy: -38.3 kcal/mol
Align Score: 0.000477

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00910

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17q21.31

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.