Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

10p11.22

lncRNA

ZEB1-AS1 ( ENSG00000237036)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

KIRP

FDR

2.59E-4

Reported as biomarkers
1

Circulating
0

Drug resistent
11

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3    G           AG         G      5 hsa-miR-939-5p
           GU GGGGUC UCGG       UCGA GGGU    
           CA CCCCAG AGCC       AGCU CUUA    
target 5 C  G      A    ACUGGGA    G    U 3 ZEB1-AS1
Start: 223  End: 243
Energy: -34.2 kcal/mol
Align Score: 0.001357
miRNA  3     G            A                 5 hsa-miR-939-5p
           GUG    GGGUCUCGG    GUCG  AGGGGU    
           CAC    CCUAGAGUC    CAGU  UCCCUA    
target 5 A   AAUA         AAAA    UA      U 3 ZEB1-AS1
Start: 224  End: 244
Energy: -35.2 kcal/mol
Align Score: 0.00166
miRNA  3 G                                  A       5 hsa-miR-939-5p
           UGG GGGUC    U            CGGAGUCG GGGGU    
           GCC CCCAG    A            GCCUCAGC UCCCG    
target 5 U   U     GUUC AGCGAUUCUCCU        C     A 3 ZEB1-AS1
Start: 103  End: 123
Energy: -36.3 kcal/mol
Align Score: 0.00045
miRNA  3       G     U          C         5 hsa-miR-939-5p
           GUGGG   GUC     CGGAGU GAGGGGU    
           UACCC   CGG     GUCUCA UUCCCCA    
target 5 A     ACA   UGCUU      C       U 3 ZEB1-AS1
Start: 262  End: 282
Energy: -36.2 kcal/mol
Align Score: 0.001167
miRNA  3                       C          5 hsa-miR-939-5p
           GUGGGG    GUCUC GGAGU GA GGGGU    
           CAUCCC    CAGAG CCUCG CU CCCCG    
target 5 C      GGCG     A     U  G     G 3 ZEB1-AS1
Start: 92  End: 112
Energy: -37.5 kcal/mol
Align Score: 0.000527

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for ZEB1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 10p11.22

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.