Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

14q32.13

lncRNA

SNHG10 ( ENSG00000247092)

miRNA

hsa-miR-1292-5p (MIMAT0005943)

mRNA

SOX4 (ENSG00000124766)

Disease

LGG

FDR

2.78E-5

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 G    AGA            A             5 hsa-miR-1292-5p
           UCGC    CGGCCUUGGGC       AGGGU    
           GGCG    GCCGGAGCCUG       UUCCA    
target 5 U    GGGA           ACCGGGG     G 3 SNHG10
Start: 339  End: 359
Energy: -37.4 kcal/mol
Align Score: 0.002813
miRNA  3       A A                        AA       5 hsa-miR-1292-5p
           GUCGC G CG GCCU            UGGGC   GGGU    
           CAGUG C GC CGGA            ACCUG   CCCA    
target 5 G     C A  G    AUGUCCAGGGAG     GUG    A 3 SNHG10
Start: 288  End: 308
Energy: -32.8 kcal/mol
Align Score: 0.008163
miRNA  3       A                      A          5 hsa-miR-1292-5p
           GUCGC   GA  CGGCCU     UGGGC    AGGGU    
           UAGCG   CU  GCCGGG     AUCCG    UCCCA    
target 5 G     GGG  AG      CGGGU     CCUC     G 3 SNHG10
Start: 30  End: 50
Energy: -35.3 kcal/mol
Align Score: 0.000392
miRNA  3 G   CAGA  G                    5 hsa-miR-1292-5p
           UCG    CG CCU   UGGGCAAGG GU    
           GGC    GC GGA   GCCCGUUCC CG    
target 5 A         G   CUC         G  G 3 SNHG10
Start: 178  End: 198
Energy: -32.5 kcal/mol
Align Score: 0.003259

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG10

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1292-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SOX4

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 14q32.13

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.