Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p36.12

lncRNA

LINC00339 ( ENSG00000218510)

miRNA

hsa-miR-149-3p (MIMAT0004609)

mRNA

E2F1 (ENSG00000101412)

Disease

LGG

FDR

1.04E-7

Reported as biomarkers
1

Circulating
0

Drug resistent
3

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                                    5 hsa-miR-149-3p
           CGUGUC          GGGGGCAG GGAGGGA    
           GCGUAG          CCCCUGUC CCUUCCU    
target 5 U      GUGAACGUUC        C       U 3 LINC00339
Start: 140  End: 160
Energy: -32.8 kcal/mol
Align Score: 0.005113
miRNA  3 CG         CAG      A 5 hsa-miR-149-3p
            UGUCGGGGG   GGAGGG    
            GCAGCCUCU   CCUCCC    
target 5  U         A        A 3 LINC00339
Start: 181  End: 201
Energy: -34.4 kcal/mol
Align Score: 0.001767
miRNA  3     G        A      GA 5 hsa-miR-149-3p
           CGU UCGGGGGC GGGAGG     
           GCA AGUCCCCG CCCUCC     
target 5 G                   G  3 LINC00339
Start: 474  End: 494
Energy: -36.7 kcal/mol
Align Score: 0.001573
miRNA  3 C   UC       G     GA 5 hsa-miR-149-3p
           GUG  GGGGGCA GGAGG     
           CGC  CCCCCGU CCUCC     
target 5 C   U              G  3 LINC00339
Start: 99  End: 119
Energy: -32.1 kcal/mol
Align Score: 0.006436
miRNA  3 C   UC       G     GA 5 hsa-miR-149-3p
           GUG  GGGGGCA GGAGG     
           CGC  CCCCCGU CCUCC     
target 5 C   U              G  3 LINC00339
Start: 76  End: 96
Energy: -32.1 kcal/mol
Align Score: 0.009301

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00339

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-149-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for E2F1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p36.12

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.