Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p36.33

lncRNA

RP4-758J18.2 ( ENSG00000224870)

miRNA

hsa-miR-326 (MIMAT0000756)

mRNA

FGF1 (ENSG00000113578)

Disease

LGG

FDR

3.48E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'   GACCUCCUUCCC-GGGUCUCC 5' hsa-miR-326
               ||||      ||||||| 
target 5' UCUGUGAGGCUCUGUCCCAGAGA RP4-758J18.2
Start: 1667  End: 1674
Site type: 8mer-1a
Context++ Score: -0.402
miRNA  3'   GACCUCCUUCCC-GGGUCUCC 5' hsa-miR-326
               ||||      ||||||| 
target 5' UCUGUGAGGCUCUGUCCCAGAGA RP4-758J18.2
Start: 2136  End: 2143
Site type: 8mer-1a
Context++ Score: -0.407
miRNA  3'   GACCUCCUUCCC-GGGUCUCC 5' hsa-miR-326
               ||||      ||||||| 
target 5' UCUGUGAGGCUCUGUCCCAGAGA RP4-758J18.2
Start: 1803  End: 1810
Site type: 8mer-1a
Context++ Score: -0.412
miRNA  3'   GACCUCCUUCCC-GGGUCUCC 5' hsa-miR-326
               ||||      ||||||| 
target 5' UCUGUGAGGCUCUGUCCCAGAGA RP4-758J18.2
Start: 2161  End: 2168
Site type: 8mer-1a
Context++ Score: -0.405
miRNA  3'   GACCUCCUUCCC-GGGUCUCC 5' hsa-miR-326
               ||||      ||||||| 
target 5' UCUGUGAGGCUCUGUCCCAGAGA RP4-758J18.2
Start: 778  End: 785
Site type: 8mer-1a
Context++ Score: -0.402
RNAbybrid target site prediction
miRNA  3'                 GG       5' hsa-miR-326
           GAC C UCCUUCCCG  UCUCC    
           CUG G AGGAGGGGC  GGAGG    
target 5' G   U C         A      U 3' RP4-758J18.2
Start: 240  End: 260
Energy: -32.3 kcal/mol
Align Score: 0.005867
miRNA  3' GA               G         5' hsa-miR-326
            CCU    CCUUCCCG  GUCUCC    
            GGA    GGAAGGGC  CAGAGG    
target 5'  A   AGAG        AG      C 3' RP4-758J18.2
Start: 326  End: 346
Energy: -34.3 kcal/mol
Align Score: 0.00185
miRNA  3' GA               G         5' hsa-miR-326
            CCU    CCUUCCCG  GUCUCC    
            GGA    GGAAGGGC  CAGAGG    
target 5'  A   AGAG        AG      C 3' RP4-758J18.2
Start: 320  End: 340
Energy: -34.3 kcal/mol
Align Score: 0.001545
miRNA  3                 GG       5 hsa-miR-326
           GAC C UCCUUCCCG  UCUCC    
           CUG G AGGAGGGGC  GGAGG    
target 5 G   U C         A      U 3 RP4-758J18.2
Start: 240  End: 260
Energy: -32.3 kcal/mol
Align Score: 0.005867
miRNA  3 GA               G         5 hsa-miR-326
            CCU    CCUUCCCG  GUCUCC    
            GGA    GGAAGGGC  CAGAGG    
target 5  A   AGAG        AG      C 3 RP4-758J18.2
Start: 326  End: 346
Energy: -34.3 kcal/mol
Align Score: 0.00185

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP4-758J18.2

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-326

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for FGF1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p36.33

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.