Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p35.3

lncRNA

SNHG12 ( ENSG00000197989)

miRNA

hsa-miR-346 (MIMAT0000773)

mRNA

ZFP36 (ENSG00000128016)

Disease

LGG

FDR

7.73E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
10

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UCUC  U       A           UG   5 hsa-miR-346
              CG    CCGU    CGCCCGUC  U    
              GC    GGCA    GUGGGCAG  G    
target 5    A  UAUU    CAGC        UG G 3 SNHG12
Start: 42  End: 62
Energy: -30.9 kcal/mol
Align Score: 0.005674
miRNA  3           GUA       GU   U 5 hsa-miR-346
           UCUCCGUCC     CGCCC  CUG    
           AGGGGCGGG     GCGGG  GGC    
target 5 G         AGCCC          C 3 SNHG12
Start: 172  End: 192
Energy: -32.2 kcal/mol
Align Score: 0.006366
miRNA  3 UCU                                5 hsa-miR-346
             CCGU   CCGUACGCCCG       UCUGU    
             GGUA   GGCAUGUGGGC       AGACA    
target 5   U    UAU           UAGUUUC     G 3 SNHG12
Start: 1222  End: 1242
Energy: -35.7 kcal/mol
Align Score: 0.004859
miRNA  3 UCU                                5 hsa-miR-346
             CCGU   CCGUACGCCCG       UCUGU    
             GGUA   GGCAUGUGGGC       AGACA    
target 5   U    UAU           UAGUUUC     G 3 SNHG12
Start: 691  End: 711
Energy: -35.7 kcal/mol
Align Score: 0.003036
miRNA  3 UCU                                5 hsa-miR-346
             CCGU   CCGUACGCCCG       UCUGU    
             GGUA   GGCAUGUGGGC       AGACA    
target 5   U    UAU           UAGUUUC     G 3 SNHG12
Start: 1497  End: 1517
Energy: -35.7 kcal/mol
Align Score: 0.005792

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG12

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-346

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ZFP36

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p35.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.