Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

4p16.3

lncRNA

NOP14-AS1 ( ENSG00000249673)

miRNA

hsa-miR-671-5p (MIMAT0003880)

mRNA

CDR1 (ENSG00000184258)

Disease

LGG

FDR

5.57E-14

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GA        A            AA  A 5 hsa-miR-671-5p
            GGUCGGGG     GGUCC CG  GG    
            CCAGCCCU     CCAGG GC  CU    
target 5  A        GGGGG     A  CA  G 3 NOP14-AS1
Start: 1350  End: 1370
Energy: -35.1 kcal/mol
Align Score: 0.007488
miRNA  3    G       A     U    AA  A 5 hsa-miR-671-5p
           GA GUCGGGG    GG CCCG  GG    
           CU CAGCCCC    CC GGGU  CC    
target 5 C  G       GCUC  U    CA  C 3 NOP14-AS1
Start: 501  End: 521
Energy: -34.7 kcal/mol
Align Score: 0.005572
miRNA  3                U    AA  A 5 hsa-miR-671-5p
           GAG GUCGGGGAGG CCCG  GG    
           CUC CAGUCCCUCC GGGU  CC    
target 5 G   A          C        A 3 NOP14-AS1
Start: 351  End: 371
Energy: -37.8 kcal/mol
Align Score: 0.002371
miRNA  3                U    AA  A 5 hsa-miR-671-5p
           GAG GUCGGGGAGG CCCG  GG    
           CUC CAGUCCCUCC GGGU  CC    
target 5 G   A          C        A 3 NOP14-AS1
Start: 22  End: 42
Energy: -37.8 kcal/mol
Align Score: 0.000213
miRNA  3 GAG     G    U    AA  A 5 hsa-miR-671-5p
             GUCGG GAGG CCCG  GG    
             CAGCC CUCC GGGC  CC    
target 5   A     A    U        A 3 NOP14-AS1
Start: 228  End: 248
Energy: -32.8 kcal/mol
Align Score: 0.00182

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for NOP14-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-671-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CDR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 4p16.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.