Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p13.3

lncRNA

RP11-1260E13.4 ( ENSG00000262061)

miRNA

hsa-miR-339-5p (MIMAT0000764)

mRNA

NOVA1 (ENSG00000139910)

Disease

PAAD

FDR

3.21E-9

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' gcaCUCGAGGACCUCCUGUCCCu 5' hsa-miR-339-5p
             ||| |:|| | |||||||| 
target 5' cagGAGGTTCT-GTGGACAGGGc 3' RP11-1260E13.4
Start: 770  End: 791
Energy: -30.34 kcal/mol
Align Score: 166
miRNA  3' gcaCUCGAGGACCUCCUGUCCCu 5' hsa-miR-339-5p
             ||| |:|| | |||||||| 
target 5' cagGAGGTTCT-GTGGACAGGGc 3' RP11-1260E13.4
Start: 914  End: 935
Energy: -30.34 kcal/mol
Align Score: 166
miRNA  3' gcaCUCGAGGACCUCCUGUCCCu 5' hsa-miR-339-5p
             ||| |::| | |||||||| 
target 5' gagGAGATTTT-GTGGACAGGGc 3' RP11-1260E13.4
Start: 866  End: 887
Energy: -25.7 kcal/mol
Align Score: 162
miRNA  3' gcaCUCGAGGACCUCCUGUCCCu 5' hsa-miR-339-5p
             ||| |:|| | |||||||| 
target 5' cagGAGGTTCT-GTGGACAGGGc 3' RP11-1260E13.4
Start: 407  End: 428
Energy: -30.34 kcal/mol
Align Score: 166
miRNA  3' gcaCUCGAGGACCUCCUGUCCCu 5' hsa-miR-339-5p
             ||| |::| | |||||||| 
target 5' gagGAGATTTT-GTGGACAGGGc 3' RP11-1260E13.4
Start: 503  End: 524
Energy: -25.7 kcal/mol
Align Score: 162
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'       C         U             5' hsa-miR-339-5p
           GCACU   GAGGACC CCUGUC  CCU    
           CGUGG   CUCCUGG GGGCGG  GGA    
target 5' A     UCA              UA   U 3' RP11-1260E13.4
Start: 808  End: 828
Energy: -34.8 kcal/mol
Align Score: 0.003795
miRNA  3'       C         U             5' hsa-miR-339-5p
           GCACU   GAGGACC CCUGUC  CCU    
           CGUGG   CUCCUGG GGGCGG  GGA    
target 5' A     UCA              UA   U 3' RP11-1260E13.4
Start: 804  End: 824
Energy: -34.8 kcal/mol
Align Score: 0.00379
miRNA  3' G          A             U 5' hsa-miR-339-5p
           CAC UCGAGG CCUCCU GUC CC    
           GUG AGCUCU GGGGGA CAG GG    
target 5' G   G      G      G   A  C 3' RP11-1260E13.4
Start: 430  End: 450
Energy: -34.1 kcal/mol
Align Score: 0.00225
miRNA  3'       C         U             5' hsa-miR-339-5p
           GCACU   GAGGACC CCUGUC  CCU    
           CGUGG   CUCCUGG GGGCGG  GGA    
target 5' A     UCA              UA   U 3' RP11-1260E13.4
Start: 338  End: 358
Energy: -34.8 kcal/mol
Align Score: 0.001505
miRNA  3       C         U             5 hsa-miR-339-5p
           GCACU   GAGGACC CCUGUC  CCU    
           CGUGG   CUCCUGG GGGCGG  GGA    
target 5 A     UCA              UA   U 3 RP11-1260E13.4
Start: 808  End: 828
Energy: -34.8 kcal/mol
Align Score: 0.003795

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for RP11-1260E13.4

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-339-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for NOVA1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p13.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.