Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

19q13.2

lncRNA

LIPE-AS1 ( ENSG00000213904)

miRNA

hsa-miR-939-5p (MIMAT0004982)

mRNA

SLC34A2 (ENSG00000157765)

Disease

LGG

FDR

2.10E-11

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 GU    G         AGU          5 hsa-miR-939-5p
            GGGG UC   UCGG   CGAGGGGU    
            CUCC AG   GGCC   GCUCCCCG    
target 5  U    G  UCU    GGU        A 3 LIPE-AS1
Start: 81  End: 101
Energy: -36.1 kcal/mol
Align Score: 0.00042
miRNA  3                                                 5 hsa-miR-939-5p
          GUGGGG GUCU CGG         AG           UCGAGGGGU    
          CACUCC CAGA GCC         UC           GGUUCUCCG    
target 5       G    G   CGAGCGGGC  GCGAGGGAACG         A 3 LIPE-AS1
Start: 1  End: 21
Energy: -31.6 kcal/mol
Align Score: 0.006106
miRNA  3 GU           G    GA        5 hsa-miR-939-5p
            GGGGGUC UCG AGUC   GGGGU    
            UCCCCAG AGC UCAG   CCCCA    
target 5  G       C   A    AGG     U 3 LIPE-AS1
Start: 409  End: 429
Energy: -38.7 kcal/mol
Align Score: 0.001606
miRNA  3 G          U    AGU          5 hsa-miR-939-5p
           UGG  GGGUC C GG   CGAGGGGU    
           GCC  CUCGG G CC   GCUCCCCG    
target 5 A   GU     U A  GU         A 3 LIPE-AS1
Start: 50  End: 70
Energy: -34.4 kcal/mol
Align Score: 0.000655
miRNA  3 G                                      U             U 5 hsa-miR-939-5p
           UGG         GGGUCUCGG               AG       CGAGGGG    
           GCC         CCCAGAGCC               UC       GCUCCCC    
target 5 U   UGCGGUGAG         UUGGGCCCGUUAUCC  UGAUGCU       C 3 LIPE-AS1
Start: 641  End: 661
Energy: -36.9 kcal/mol
Align Score: 0.003142

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LIPE-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-939-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SLC34A2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 19q13.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.