Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

17p11.2

lncRNA

CCDC144NL-AS1 ( ENSG00000233098)

miRNA

hsa-miR-346 (MIMAT0000773)

mRNA

IL18 (ENSG00000150782)

Disease

PAAD

FDR

6.27E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3               A           GU 5 hsa-miR-346
           UCUC CGUC CGU CG CC CGUCU     
           AGAG GCAG GCG GC GG GCAGG     
target 5 G    A    C      U  A     U  3 CCDC144NL-AS1
Start: 166  End: 186
Energy: -31.4 kcal/mol
Align Score: 0.005192
miRNA  3               A                5 hsa-miR-346
           UCUC CGUC CGU CG CC CGUC UGU    
           AGAG GCAG GCG GC GG GCAG ACA    
target 5 G    A    C      U  A    G   U 3 CCDC144NL-AS1
Start: 158  End: 178
Energy: -32.6 kcal/mol
Align Score: 0.005403
miRNA  3               A                5 hsa-miR-346
           UCUC CGUC CGU CG CC CGUC UGU    
           AGAG GCAG GCG GC GG GCAG ACA    
target 5 G    A    C      U  A    G   U 3 CCDC144NL-AS1
Start: 120  End: 140
Energy: -32.6 kcal/mol
Align Score: 0.005846
miRNA  3               A                5 hsa-miR-346
           UCUC CGUC CGU CG CC CGUC UGU    
           AGAG GCAG GCG GC GG GCAG ACA    
target 5 G    A    C      U  A    G   U 3 CCDC144NL-AS1
Start: 116  End: 136
Energy: -32.6 kcal/mol
Align Score: 0.007051
miRNA  3                A             U    5 hsa-miR-346
           UCUCC   GUCCGU      CGCCCGUC GU    
           AGAGG   CAGGCA      GCGGGCAG CA    
target 5 C     AGC      CACAGG           A 3 CCDC144NL-AS1
Start: 1115  End: 1135
Energy: -39.2 kcal/mol
Align Score: 0.000988

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CCDC144NL-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-346

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for IL18

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 17p11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.