Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

2q22.3

lncRNA

TEX41 ( ENSG00000226674)

miRNA

hsa-miR-370-3p (MIMAT0000722)

mRNA

GADD45A (ENSG00000116717)

Disease

PAAD

FDR

8.99E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3     U   A                             5 hsa-miR-370-3p
           UGG CCA   GGUGGGGUC           GUCCG    
           ACC GGU   UCGCCUCAG           CAGGC    
target 5 C   U   ACA         GGCAUUCAUUU     U 3 TEX41
Start: 505  End: 525
Energy: -31.5 kcal/mol
Align Score: 0.007047
miRNA  3     U   A                             5 hsa-miR-370-3p
           UGG CCA   GGUGGGGUC           GUCCG    
           ACC GGU   UCGCCUCAG           CAGGC    
target 5 C   U   ACA         GGCAUUCAUUU     U 3 TEX41
Start: 565  End: 585
Energy: -31.5 kcal/mol
Align Score: 0.009333
miRNA  3     U   A                             5 hsa-miR-370-3p
           UGG CCA   GGUGGGGUC           GUCCG    
           ACC GGU   UCGCCUCAG           CAGGC    
target 5 C   U   ACA         GGCAUUCAUUU     U 3 TEX41
Start: 261  End: 281
Energy: -31.5 kcal/mol
Align Score: 0.005425
miRNA  3        AA    GG           5 hsa-miR-370-3p
           UGGUCC  GGUG  GUCGU CCG    
           ACCAGG  CCAC  CAGCA GGU    
target 5 C            A      A   C 3 TEX41
Start: 565  End: 585
Energy: -31.6 kcal/mol
Align Score: 0.00713
miRNA  3        AA               G   U  G 5 hsa-miR-370-3p
           UGGUCC           GGUGGG UCG CC    
           GCCAGG           CCACCC GGC GG    
target 5 U      GUCUUCCUCUG      A   U  A 3 TEX41
Start: 608  End: 628
Energy: -33.7 kcal/mol
Align Score: 0.005164

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for TEX41

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-370-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for GADD45A

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 2q22.3

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.