Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

1p36.12

lncRNA

LINC00339 ( ENSG00000218510)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

HIST1H3D (ENSG00000197409)

Disease

LIHC

FDR

6.33E-16

Reported as biomarkers
1

Circulating
0

Drug resistent
3

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3     G                           5 hsa-miR-760
           AGG GUG       UCUGGG  UCUCGGC    
           UCC CAC       AGGCCU  GGAGCCG    
target 5 U   G   UCGGGCU      UC       C 3 LINC00339
Start: 355  End: 375
Energy: -31.8 kcal/mol
Align Score: 0.006929
miRNA  3     G                           5 hsa-miR-760
           AGG GUG       UCUGGG  UCUCGGC    
           UCC CAC       AGGCCU  GGAGCCG    
target 5 U   G   UCGGGCU      UC       C 3 LINC00339
Start: 342  End: 362
Energy: -31.8 kcal/mol
Align Score: 0.008643
miRNA  3 AG                   G       C 5 hsa-miR-760
            GGGU         GUCUGG  UCUCGG    
            CCCA         UGGGCC  GGAGCC    
target 5  A    AUGAAAUGA      GA      A 3 LINC00339
Start: 142  End: 162
Energy: -28.5 kcal/mol
Align Score: 0.009753
miRNA  3 AG    G  U         C 5 hsa-miR-760
            GGGU UC GGGUCUCGG    
            CCCG AG CUCAGAGCU    
target 5  G    G            C 3 LINC00339
Start: 33  End: 53
Energy: -29.8 kcal/mol
Align Score: 0.00771

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00339

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for HIST1H3D

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 1p36.12

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.