Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

13q14.11

lncRNA

LINC00598 ( ENSG00000215483)

miRNA

hsa-miR-1296-5p (MIMAT0005794)

mRNA

ERBB2 (ENSG00000141736)

Disease

LUAD

FDR

3.31E-2

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
miRNA  3' ccUCU-ACCUCGGUCCCGGGAUu 5' hsa-miR-1296-5p
            :|| ||| |:|| ||||||| 
target 5' caGGAGTGGTGTCATGGCCCTAt 3' LINC00598
Start: 3167  End: 3189
Energy: -31.18 kcal/mol
Align Score: 167
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3'            GG        GAUU 5' hsa-miR-1296-5p
           CCUCUACCUC    UCCCGG       
           GGAGAUGGAG    AGGGCC       
target 5' U          GAAG      A    3' LINC00598
Start: 1739  End: 1759
Energy: -35 kcal/mol
Align Score: 0.007275
miRNA  3'            A               U 5' hsa-miR-1296-5p
           CCU     CU CCUCGGUCCCGGGAU    
           GGA     GA GGAGCCAGGGCUCUG    
target 5' U   AGACU  C               C 3' LINC00598
Start: 374  End: 394
Energy: -39.1 kcal/mol
Align Score: 0.001816
miRNA  3' C                    G      5' hsa-miR-1296-5p
           CUCUACCUCGGUCCC    G GAUU    
           GGGAUGGAGCUGGGG    U CUGA    
target 5' U               GAUU G    U 3' LINC00598
Start: 850  End: 870
Energy: -34.1 kcal/mol
Align Score: 0.006166
miRNA  3'            A               U 5' hsa-miR-1296-5p
           CCU     CU CCUCGGUCCCGGGAU    
           GGA     GA GGAGCCAGGGCUCUG    
target 5' U   AGACU  C               C 3' LINC00598
Start: 406  End: 426
Energy: -39.1 kcal/mol
Align Score: 0.00185
miRNA  3' C                                  5' hsa-miR-1296-5p
           CUCU         AC CUCGG UCCCGGGAUU    
           GAGG         UG GAGUC GGGGCCUUGG    
target 5' A    CAUGACUGC  U     U          A 3' LINC00598
Start: 275  End: 295
Energy: -30.3 kcal/mol
Align Score: 0.008399

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00598

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1296-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ERBB2

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 13q14.11

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.