Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

3q29

lncRNA

LINC00969 ( ENSG00000242086)

miRNA

hsa-miR-639 (MIMAT0003309)

mRNA

FOXC1 (ENSG00000054598)

Disease

PAAD

FDR

7.20E-4

Reported as biomarkers
0

Circulating
1

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 UG      G         CG    UA 5 hsa-miR-639
            UCGCGA CGU   UGG  UCGC     
            GGCGCU GCG   GCC  GGCG     
target 5  U      G   CUG   AA    U  3 LINC00969
Start: 79  End: 99
Energy: -30.5 kcal/mol
Align Score: 0.009273
miRNA  3         AG                              A 5 hsa-miR-639
           UGUCGCG  CGU              UGGCG  UCG CU    
           GCAGCGC  GUA              GCCGU  AGC GA    
target 5 U       AG   GAAAAUUAUGGCAU     UU   A  A 3 LINC00969
Start: 313  End: 333
Energy: -30.5 kcal/mol
Align Score: 0.008073
miRNA  3                                         CUA 5 hsa-miR-639
           UGUCG    CGAG   CGUUGG            CGUCG      
           GCAGU    GCUC   GCAGCC            GCAGC      
target 5 U     CUCA    ACU      UCAAACUCCUGG     U   3 LINC00969
Start: 218  End: 238
Energy: -29.8 kcal/mol
Align Score: 0.007968
miRNA  3            C     C   GCUA 5 hsa-miR-639
           UGUCG CGAG GUUGG GUC       
           GCAGC GCUC CAACC CAG       
target 5 G     U    C     C   A    3 LINC00969
Start: 298  End: 318
Energy: -30.2 kcal/mol
Align Score: 0.008829
miRNA  3            C     C   GCUA 5 hsa-miR-639
           UGUCG CGAG GUUGG GUC       
           GCAGC GCUC CAACC CAG       
target 5 G     U    C     C   A    3 LINC00969
Start: 151  End: 171
Energy: -30.2 kcal/mol
Align Score: 0.008321

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for LINC00969

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-639

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for FOXC1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 3q29

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.