Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

20q11.23

lncRNA

SNHG17 ( ENSG00000196756)

miRNA

hsa-miR-33b-3p (MIMAT0004811)

mRNA

SALL4 (ENSG00000101115)

Disease

LUAD

FDR

6.83E-7

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3              G                AC 5 hsa-miR-33b-3p
           CCCGACGUGACG      CU CCG   UG     
           GGGCUGUGCUGC      GA GGC   GC     
target 5 U            ACCUCG  C   UUC  A  3 SNHG17
Start: 144  End: 164
Energy: -32.5 kcal/mol
Align Score: 0.007761
miRNA  3              G                AC 5 hsa-miR-33b-3p
           CCCGACGUGACG      CU CCG   UG     
           GGGCUGUGCUGC      GA GGC   GC     
target 5 U            ACCUCG  C   UUC  A  3 SNHG17
Start: 88  End: 108
Energy: -32.5 kcal/mol
Align Score: 0.006897
miRNA  3              G                AC 5 hsa-miR-33b-3p
           CCCGACGUGACG      CU CCG   UG     
           GGGCUGUGCUGC      GA GGC   GC     
target 5 U            ACCUCG  C   UUC  A  3 SNHG17
Start: 314  End: 334
Energy: -32.5 kcal/mol
Align Score: 0.003801
miRNA  3         UG    C          C 5 hsa-miR-33b-3p
           CCCGACG  ACGG    UCCGUGA    
           GGGCUGC  UGCC    AGGUGCU    
target 5 G             AAGA       C 3 SNHG17
Start: 680  End: 700
Energy: -32.7 kcal/mol
Align Score: 0.005407

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG17

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-33b-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for SALL4

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 20q11.23

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.