Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

14q11.2

lncRNA

PRMT5-AS1 ( ENSG00000237054)

miRNA

hsa-miR-3940-5p (MIMAT0019229)

mRNA

USP28 (ENSG00000048028)

Disease

LUAD

FDR

6.36E-4

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3      C GG              5 hsa-miR-3940-5p
           GUCU G  CGGGGUUGGGUG    
           CAGA C  GUCUUGGCCCAC    
target 5 A      UU            A 3 PRMT5-AS1
Start: 101  End: 121
Energy: -31.5 kcal/mol
Align Score: 0.008594
miRNA  3 GU                         U         5 hsa-miR-3940-5p
            CUCGGG CG             GGG  UGGGUG    
            GAGCCC GC             CCC  GCCCAC    
target 5  U      U  AAUUAAUUAUAAU   UU      C 3 PRMT5-AS1
Start: 88  End: 108
Energy: -31.3 kcal/mol
Align Score: 0.008569
miRNA  3                G           5 hsa-miR-3940-5p
           GUC  UCGGGCGGG U  UGGGUG    
           CGG  GGCCUGCUU G  GCCCGC    
target 5 C   UC         G CU      A 3 PRMT5-AS1
Start: 353  End: 373
Energy: -31.6 kcal/mol
Align Score: 0.008161
miRNA  3                G           5 hsa-miR-3940-5p
           GUC  UCGGGCGGG U  UGGGUG    
           CGG  GGCCUGCUU G  GCCCGC    
target 5 C   UC         G CU      A 3 PRMT5-AS1
Start: 336  End: 356
Energy: -31.6 kcal/mol
Align Score: 0.005557
miRNA  3                G           5 hsa-miR-3940-5p
           GUC  UCGGGCGGG U  UGGGUG    
           CGG  GGCCUGCUU G  GCCCGC    
target 5 C   UC         G CU      A 3 PRMT5-AS1
Start: 97  End: 117
Energy: -31.6 kcal/mol
Align Score: 0.006035

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for PRMT5-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-3940-5p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for USP28

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 14q11.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.