Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

16q12.2

lncRNA

CRNDE ( ENSG00000245694)

miRNA

hsa-miR-760 (MIMAT0004957)

mRNA

HIST1H3D (ENSG00000197409)

Disease

PAAD

FDR

3.89E-2

Reported as biomarkers
5

Circulating
4

Drug resistent
23

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 AGG      U       U       C 5 hsa-miR-760
             GGUGUC     GGG   CUCGG    
             CCACAG     CCC   GGGCC    
target 5   G      UGACU   UCU     U 3 CRNDE
Start: 182  End: 202
Energy: -29 kcal/mol
Align Score: 0.009269
miRNA  3 A                                    C 5 hsa-miR-760
           GGGGUGU   CUGG               GUCUCGG    
           CCCCGCG   GACC               UAGGGCC    
target 5 G       CCC    AGACGUCCCGUGGGC       U 3 CRNDE
Start: 34  End: 54
Energy: -30.8 kcal/mol
Align Score: 0.007146
miRNA  3 A        U       U   C 5 hsa-miR-760
           GGGGUGUC GGG  UC CGG    
           CCCCACGG CCC  AG GCC    
target 5 G        C   UC  C   C 3 CRNDE
Start: 223  End: 243
Energy: -32.3 kcal/mol
Align Score: 0.005307
miRNA  3 A        U       U   C 5 hsa-miR-760
           GGGGUGUC GGG  UC CGG    
           CCCCACGG CCC  AG GCC    
target 5 G        C   UC  C   C 3 CRNDE
Start: 263  End: 283
Energy: -32.3 kcal/mol
Align Score: 0.003047

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for CRNDE

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-760

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for HIST1H3D

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 16q12.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.