Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

20q11.23

lncRNA

SNHG17 ( ENSG00000196756)

miRNA

hsa-miR-1254 (MIMAT0005905)

mRNA

CCAR1 (ENSG00000060339)

Disease

LUSC

FDR

1.62E-13

Reported as biomarkers
0

Circulating
0

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3 U     C  A     AA        A 5 hsa-miR-1254
           GACGU CG GGUCG    GGUCCG    
           CUGUG GC CCAGU    CCAGGU    
target 5 C     U        GGCC      G 3 SNHG17
Start: 47  End: 67
Energy: -31.2 kcal/mol
Align Score: 0.006481
miRNA  3                         GU                 5 hsa-miR-1254
           UGACGUC CGA           G  CGA  AGG  UCCGA    
           GCUGCGG GCU           U  GCU  UCC  GGGCU    
target 5 A       U   UGUAAGAGUCA GU   GU   UG     U 3 SNHG17
Start: 400  End: 420
Energy: -32.6 kcal/mol
Align Score: 0.008282
miRNA  3                             U  AA          5 hsa-miR-1254
           UGACGUC CGA              GG CG   GGUCCGA    
           GCUGCGG GCU              UC GU   CCAGGCU    
target 5 A       U   UGUAAGGGUCUCAU  U  CAC       G 3 SNHG17
Start: 467  End: 487
Energy: -31.4 kcal/mol
Align Score: 0.007844
miRNA  3                      U  AA          A 5 hsa-miR-1254
           UGACGU        CCGAGG CG     GGUC CG    
           GCUGCA        GGCUUC GC     CCAG GC    
target 5 U      CCUCGGAC         ACCAG    C  C 3 SNHG17
Start: 321  End: 341
Energy: -30.7 kcal/mol
Align Score: 0.008368
miRNA  3                                 G       5 hsa-miR-1254
           UGACG      UC CGAGG   UCGA   AG UCCGA    
           GCUGC      GG GCUCC   AGCU   UU GGGCU    
target 5 U     CAAGAA  U     CUG    UGA  G     C 3 SNHG17
Start: 685  End: 705
Energy: -32.5 kcal/mol
Align Score: 0.006464

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SNHG17

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-1254

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCAR1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 20q11.23

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.