Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

6q21

lncRNA

TRAF3IP2-AS1 ( ENSG00000231889)

miRNA

hsa-miR-149-3p (MIMAT0004609)

mRNA

WNT1 (ENSG00000125084)

Disease

LUSC

FDR

1.14E-22

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3    UG        A   AG    A 5 hsa-miR-149-3p
           CG  UCGGGGGC GGG    GG    
           GC  GGUCCCUG CCC    CC    
target 5 U  UG            AAUA  A 3 TRAF3IP2-AS1
Start: 170  End: 190
Energy: -32.6 kcal/mol
Align Score: 0.008231
miRNA  3    UG        A   AG    A 5 hsa-miR-149-3p
           CG  UCGGGGGC GGG    GG    
           GC  GGUCCCUG CCC    CC    
target 5 U  UG            AAUA  A 3 TRAF3IP2-AS1
Start: 161  End: 181
Energy: -32.6 kcal/mol
Align Score: 0.003458
miRNA  3    UG        A   AG    A 5 hsa-miR-149-3p
           CG  UCGGGGGC GGG    GG    
           GC  GGUCCCUG CCC    CC    
target 5 U  UG            AAUA  A 3 TRAF3IP2-AS1
Start: 267  End: 287
Energy: -32.6 kcal/mol
Align Score: 0.005468
miRNA  3    UG          CAG         A 5 hsa-miR-149-3p
           CG  UCG   GGGG      GGAGGG    
           GC  AGU   CCCC      CCUCCC    
target 5 U  UG   UUU    AGAAGG      A 3 TRAF3IP2-AS1
Start: 220  End: 240
Energy: -30.8 kcal/mol
Align Score: 0.005862
miRNA  3 CGUGU      C           5 hsa-miR-149-3p
               CGGGGG AGGGAGGGA    
               GCCCCC UCCUUCCCU    
target 5     C      U         C 3 TRAF3IP2-AS1
Start: 395  End: 415
Energy: -36.5 kcal/mol
Align Score: 0.00161

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for TRAF3IP2-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-149-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for WNT1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 6q21

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.