Basic Info

Starting a new search ...

Basic Information for the CNV-ceRNA event

Cytoband

4q12

lncRNA

SRD5A3-AS1 ( ENSG00000249700)

miRNA

hsa-miR-150-3p (MIMAT0004610)

mRNA

CCR6 (ENSG00000112486)

Disease

LUSC

FDR

7.25E-12

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
miRNA  3'    GACAGGGGGUCCGGACAUGGUC 5' hsa-miR-150-3p
                           ||||||| 
target 5'   UCAUGUUUUGUCAGAUGUACCAA SRD5A3-AS1
Start: 29  End: 36
Site type: 8mer-1a
Context++ Score: -0.455
miRNA  3'    GACAGGGGGUCCGGACAUGGUC 5' hsa-miR-150-3p
                           ||||||| 
target 5'   UCAUGUUUUGUCAGAUGUACCAA SRD5A3-AS1
Start: 234  End: 241
Site type: 8mer-1a
Context++ Score: -0.404
RNAbybrid target site prediction
miRNA  3       G        A      GUC 5 hsa-miR-150-3p
           GACAG GGGUCCGG   CAUG      
           CUGUU CCCAGGCU   GUGC      
target 5 U     G        GGA    A   3 SRD5A3-AS1
Start: 888  End: 908
Energy: -33.9 kcal/mol
Align Score: 0.008465
miRNA  3       G        A      GUC 5 hsa-miR-150-3p
           GACAG GGGUCCGG   CAUG      
           CUGUU UCCAGGCU   GUGC      
target 5 U     G        GGA    A   3 SRD5A3-AS1
Start: 312  End: 332
Energy: -31.5 kcal/mol
Align Score: 0.006657
miRNA  3 G    G        A             5 hsa-miR-150-3p
           ACAG GGGUCCGG   CAUG  GUC    
           UGUU CCCAGGCU   GUGC  CAG    
target 5 U    G        GGA    AG   C 3 SRD5A3-AS1
Start: 10  End: 30
Energy: -32.8 kcal/mol
Align Score: 0.005322
miRNA  3 GAC    G                   G       C 5 hsa-miR-150-3p
             AGGG               GUCCG ACAUGGU    
             UCCC               CAGGC UGUGCCA    
target 5   U    AAGUAGCUGGGACUA     G       C 3 SRD5A3-AS1
Start: 222  End: 242
Energy: -31.6 kcal/mol
Align Score: 0.009637
miRNA  3 G    G        A             5 hsa-miR-150-3p
           ACAG GGGUCCGG   CAUG  GUC    
           UGUU CCCAGGCU   GUGC  CAG    
target 5 U    G        GGA    AG   C 3 SRD5A3-AS1
Start: 389  End: 409
Energy: -32.8 kcal/mol
Align Score: 0.007956

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for SRD5A3-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-150-3p

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CCR6

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 4q12

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.