Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

5q15

lncRNA

NR2F1-AS1 ( ENSG00000237187)

miRNA

hsa-miR-940 (MIMAT0004983)

mRNA

CD274 (ENSG00000120217)

Disease

PAAD

FDR

6.27E-3

Reported as biomarkers
0

Circulating
1

Drug resistent
1

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                                 G           5 hsa-miR-940
           CCCCU       CGCCC            CC  GGACGGAA    
           GGGGA       GUGGG            GG  CCUGUCUU    
target 5 A     AGAAGAU     AGACAAAGAUGU  AG        C 3 NR2F1-AS1
Start: 445  End: 465
Energy: -30.3 kcal/mol
Align Score: 0.008867
miRNA  3                                 G           5 hsa-miR-940
           CCCCU       CGCCC            CC  GGACGGAA    
           GGGGA       GUGGG            GG  CCUGUCUU    
target 5 A     AGAAGAU     AGACAAAGAUGU  AG        C 3 NR2F1-AS1
Start: 392  End: 412
Energy: -30.3 kcal/mol
Align Score: 0.00788
miRNA  3        CGC       A    AA 5 hsa-miR-940
           CC CCU   CCCCGGG  CGG     
           GG GGA   GGGGCCC  GCC     
target 5 C  C             GG   G  3 NR2F1-AS1
Start: 49  End: 69
Energy: -33.7 kcal/mol
Align Score: 0.007513
miRNA  3                                 G           5 hsa-miR-940
           CCCCU       CGCCC            CC  GGACGGAA    
           GGGGA       GUGGG            GG  CCUGUCUU    
target 5 A     AGAAGAU     AGACAAAGAUGU  AG        C 3 NR2F1-AS1
Start: 471  End: 491
Energy: -30.3 kcal/mol
Align Score: 0.009071
miRNA  3          C             AA 5 hsa-miR-940
           CCCC UCG CCCCG GGA CGG     
           GGGG AGC GGGGC CCU GCC     
target 5 G    U   A     U   U   C  3 NR2F1-AS1
Start: 145  End: 165
Energy: -38.6 kcal/mol
Align Score: 0.000692

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for NR2F1-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-940

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for CD274

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 5q15

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.