Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

22q13.2

lncRNA

NDUFA6-AS1 ( ENSG00000237037)

miRNA

hsa-miR-940 (MIMAT0004983)

mRNA

ZNF24 (ENSG00000172466)

Disease

PAAD

FDR

3.99E-6

Reported as biomarkers
0

Circulating
0

Drug resistent
0

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
                       NA                  
                                           
                         
            NA
TargetScan target site prediction
                                           
                       NA                  
                                           
                         
            NA
RNAbybrid target site prediction
miRNA  3                           AA 5 hsa-miR-940
           CC CCUCG    CCCCCGGGAC GG     
           GG GGGGC    GGGGGCCCUG CC     
target 5 U  A     CCAA          G  A  3 NDUFA6-AS1
Start: 1335  End: 1355
Energy: -41.7 kcal/mol
Align Score: 0.000514
miRNA  3                                            AA 5 hsa-miR-940
           CCCCU            CGCCCC           CGGGACGG     
           GGGGA            GCGGGG           GUCCUGCU     
target 5 C     CGCCGAGCGACU      UUUCCCUCAGC        A  3 NDUFA6-AS1
Start: 93  End: 113
Energy: -36.2 kcal/mol
Align Score: 0.000786
miRNA  3                                            AA 5 hsa-miR-940
           CCCCU            CGCCCC           CGGGACGG     
           GGGGA            GCGGGG           GUCCUGCU     
target 5 C     CGCCGAGCGACU      UUUCCCUCAGC        A  3 NDUFA6-AS1
Start: 93  End: 113
Energy: -36.2 kcal/mol
Align Score: 0.001432
miRNA  3 C                         AA 5 hsa-miR-940
           CCC    UCGCCCC   CGGGACGG     
           GGG    GGUGGGG   GUCCUGCC     
target 5 U   CUGC       CUU        G  3 NDUFA6-AS1
Start: 6  End: 26
Energy: -36.6 kcal/mol
Align Score: 0.001368
miRNA  3                               G             AA 5 hsa-miR-940
           CCCCU               CGCCCCCGG          ACGG     
           GGGGA               GUGGGGGCU          UGCU     
target 5 A     GAUGGUCAGGCCAGU         AAUGAAUAAA    A  3 NDUFA6-AS1
Start: 351  End: 371
Energy: -33.9 kcal/mol
Align Score: 0.002762

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for NDUFA6-AS1

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-940

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for ZNF24

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 22q13.2

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.