Basic Info

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Basic Information for the CNV-ceRNA event

Cytoband

11p15.5

lncRNA

H19 ( ENSG00000130600)

miRNA

hsa-miR-326 (MIMAT0000756)

mRNA

FGF1 (ENSG00000113578)

Disease

OV

FDR

3.99E-2

Reported as biomarkers
15

Circulating

13

Drug resistent

52

Survival

Binding Info

miRNA Binding site information on lncRNA

miRanda target site prediction
                                           
NA

                         
NA

TargetScan target site prediction
                                           
NA

                         
NA

RNAbybrid target site prediction
miRNA  3 GA     U       U   C 5 hsa-miR-326
CCUCC UCCCGGG CUC
GGAGG GGGGCCC GGG
target 5 G C A 3 H19
Start: 305  End: 325
Energy: -33.7 kcal/mol
Align Score: 0.009016
miRNA  3          U          C        5 hsa-miR-326
GACCUCCU CCCGGGU UCC
CUGGGGGG GGGCCCG AGG
target 5 G UUAU UUCC C 3 H19
Start: 233  End: 253
Energy: -33.8 kcal/mol
Align Score: 0.009563
miRNA  3 G                           5 hsa-miR-326
ACCUC CUUCCCG GGUCUCC
UGGGG GAGGGGC CCAGGGG
target 5 G AACC AA A 3 H19
Start: 8  End: 28
Energy: -34.2 kcal/mol
Align Score: 0.007728
miRNA  3                                      5 hsa-miR-326
GACCUC CUUCCCG GGUCUCC
CUGGGG GAGGGGC CCAGGGG
target 5 A AAGUGGGGAACC AA A 3 H19
Start: 29  End: 49
Energy: -34.3 kcal/mol
Align Score: 0.006617
miRNA  3 GA     U       U   C 5 hsa-miR-326
CCUCC UCCCGGG CUC
GGAGG GGGGCCC GGG
target 5 G C A 3 H19
Start: 113  End: 133
Energy: -33.7 kcal/mol
Align Score: 0.007182

Functions

Dysregulated fucntions of CNV-ceRNA event

Hallmarks

Dysregulated hallmarks of CNV-ceRNA event

Network

Related ceRNA network disturbed by CNV

Survival

Survival status of ceRNA interaction

Samples

Samples with different CNV status

Annotations

External Annotation for H19

LncRNA-associated competing triplets and functions.

Comprehensive experimentally supported associations between lncRNA and human cancer.

An open-source platform for studying the RNA-RNA interactions from CLIP-seq data.

An integrated knowledge database dedicated to non-coding RNAs.

An integrated database of human annotated lncRNA transcripts.

Comprehensive annotations of eukaryotic long non-coding RNAs.



External Annotation for hsa-miR-326

A high quality database of published miRNA sequences and annotation.

A curated miRNA-target database developed by DIANA LAB.

A miRNA-target database by manually filter research articles related to functional studies of miRNAs.

A comprehensive of microRNA diversity, expression profiles, target relationships, and various supporting tools.



External Annotation for FGF1

Information on all annotated and predicted human genes.

Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).

Genome browser for vertebrate genomes.

An annotated collection of all publicly available DNA sequences.



External Annotation for variation: 11p15.5

A comprehensive, authoritative compendium of human genes and genetic phenotypes.

A database of human single nucleotide variations, microsatellites, and small-scale insertions and deletions

The catalogue of somatic mutations in cancer.