Basic Info
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Basic Information for the SNP-ceRNA event
Variation
rs2032542 chr1:9191810(T/C)
lncRNA
LNCTAM34A ( ENSG00000234546)
miRNA
hsa-miR-30b-3p (MIMAT0004589)
mRNA
BECN1 (ENSG00000126581)
Population
EUR
FDR
6.55E-4
Reported as biomarkers
![]() Circulating |
![]() Drug resistent |
![]() Survival |
Binding Info
Altered binding affnity between reference and alternative allele
miRanda reference allele (gain)
miRNA 3' cuUCAUUUGUAGGUGGAGGGUc 5' hsa-miR-30b-3p | Start: 47 End: 67Energy: -27.69 kcal/mol Align Score: 178 |
miRanda alternative allele (gain)
miRNA 3' cuUCAUUUGUAGGUGGAGGGUc 5' hsa-miR-30b-3p | Start: 47 End: 67Energy: -23.06 kcal/mol Align Score: 170 |
TargetScan reference allele (gain)
miRNA 3' CUUCAUUUGUAGGUGGAGGGUC 5' hsa-miR-30b-3p | Start: 60 End: 67Site type: 8mer-1a Context++ Score: -0.429 |
TargetScan alternative allele (gain)
miRNA 3' CUUCAUUUGUAGGUGGAGGGUC 5' hsa-miR-30b-3p | Start: 60 End: 67Site type: 8mer-1a Context++ Score: -0.423 |
RNAhybrid reference allele (gain)
RNAhybrid alternative allele (loss)
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Functions
Dysregulated fucntions of SNP-ceRNA event
Hallmarks
Dysregulated hallmarks of SNP-ceRNA event
Network
The LNCTAM34A-associated ceRNA network which were dysregulated by rs2032542