Basic Info
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Basic Information for the SNP-ceRNA event
Variation
rs9685530 chr4:14477456(T/C)
lncRNA
LINC00504 ( ENSG00000248360)
miRNA
hsa-miR-769-5p (MIMAT0003886)
mRNA
TRAPPC2B (ENSG00000256060)
Population
EUR
FDR
3.55E-2
Reported as biomarkers
![]() Circulating |
![]() Drug resistent |
![]() Survival |
Binding Info
Altered binding affnity between reference and alternative allele
miRanda reference allele (loss)
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miRanda alternative allele (loss)
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TargetScan reference allele (gain)
miRNA 3' UCGAGUCUUGGGUCUCCAGAGU 5' hsa-miR-769-5p | Start: 57 End: 64Site type: 8mer-1a Context++ Score: -0.433 |
TargetScan alternative allele (gain)
miRNA 3' UCGAGUCUUGGGUCUCCAGAGU 5' hsa-miR-769-5p | Start: 57 End: 64Site type: 8mer-1a Context++ Score: -0.444 |
RNAhybrid reference allele (loss)
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RNAhybrid alternative allele (loss)
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Functions
Dysregulated fucntions of SNP-ceRNA event
Hallmarks
Dysregulated hallmarks of SNP-ceRNA event
Network
The LINC00504-associated ceRNA network which were dysregulated by rs9685530