Basic Info
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Basic Information for the SNP-ceRNA event
Variation
rs17406145 chr1:20651622(G/A)
lncRNA
PINK1-AS ( ENSG00000117242)
miRNA
hsa-miR-27a-3p (MIMAT0000084)
mRNA
SEMA6A (ENSG00000092421)
Population
EUR_YRI
FDR
5.92E-7
Reported as biomarkers
![]() Circulating |
![]() Drug resistent |
![]() Survival |
Binding Info
Altered binding affnity between reference and alternative allele
miRanda reference allele (loss)
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miRanda alternative allele (loss)
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TargetScan reference allele (gain)
miRNA 3' CGCCUUGAAUCGGUGACACUU 5' hsa-miR-27a-3p | Start: 26 End: 33Site type: 8mer-1a Context++ Score: -0.402 |
TargetScan alternative allele (gain)
miRNA 3' CGCCUUGAAUCGGUGACACUU 5' hsa-miR-27a-3p | Start: 26 End: 33Site type: 8mer-1a Context++ Score: -0.406 |
RNAhybrid reference allele (loss)
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RNAhybrid alternative allele (loss)
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Functions
Dysregulated fucntions of SNP-ceRNA event
Hallmarks
Dysregulated hallmarks of SNP-ceRNA event
Network
The PINK1-AS-associated ceRNA network which were dysregulated by rs17406145