Basic Info
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Basic Information for the SNP-ceRNA event
Variation
rs4769814 chr13:30158585(C/T)
lncRNA
LINC00384 ( ENSG00000232117)
miRNA
hsa-miR-93-3p (MIMAT0004509)
mRNA
PDCD4 (ENSG00000150593)
Population
EUR_YRI
FDR
4.70E-5
Reported as biomarkers
![]() Circulating |
![]() Drug resistent |
![]() Survival |
Binding Info
Altered binding affnity between reference and alternative allele
miRanda reference allele (gain)
miRNA 3' gcccUUCACGAUCG-AGUCGUCa 5' hsa-miR-93-3p | Start: 46 End: 68Energy: -19.69 kcal/mol Align Score: 161 |
miRanda alternative allele (gain)
miRNA 3' gcccUUCACGAUCG-AGUCGUCa 5' hsa-miR-93-3p | Start: 46 End: 68Energy: -20.14 kcal/mol Align Score: 165 |
TargetScan reference allele (loss)
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TargetScan alternative allele (gain)
miRNA 3' GCCCUUCACGAUCG-AGUCGUCA 5' hsa-miR-93-3p | Start: 61 End: 68Site type: 8mer-1a Context++ Score: -0.409 |
RNAhybrid reference allele (loss)
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RNAhybrid alternative allele (loss)
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Functions
Dysregulated fucntions of SNP-ceRNA event
Hallmarks
Dysregulated hallmarks of SNP-ceRNA event
Network
The LINC00384-associated ceRNA network which were dysregulated by rs4769814