The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Detail


Chr chr1
start 248691760
end 248716755
lncRNA name ENSG00000229703
entrez id NA
hgnc id NA
ensg id ENSG00000229703
refseq id NA
methods qPCR, SNP array etc.
regulated differential expression
function description qPCR was used to selectively validate lincRNA-associated CNVs showing a predicted recurrence within 7 pairs. Of 33 qPCR reaction assays for 6 lincRNAs, 28 (85%) were in agreement with the prediction from Nexus. All six calls for sample BC-4 were detected while five calls for BC-5 were not detected.
pubmed id 23267367
year 2012
title Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis.
drug X
circulating X
survival X

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