The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Detail


Chr chr12
start 6964097
end 6964191
ID MI0000457
miRNA_name hsa-miR-141
methods qRT-PCR,etc
regulated up
Function Description In summary, we successfully developed a single-molecule method for the quantification of circulating miRNA biomarkers. Taking the advantage of the sensitivity of TIRFM-based single-molecule platform and the amplification of CHA, rapid and sensitive miRNA detection with low background signal was readily achieved. With smCHA, synthetic miRNA targets can be detected in solution with an excellent detection limit below 0.02 fM, and the circulating miRNAs can be quantified showing a good agreement with the RT-qPCR as gold standard. Differential levels of circulating miRNAs were discovered between cancer samples and healthy controls. Our method avoids the steps of RNA isolation, PCR amplification, and elaborated result analysis which typically take roughly 3-4 h. smCHA can deliver result of single sample within 0.5 h (10 min for pretreatment, 15 min for CHA, and 5 min for single-molecule counting). Multiplexing can achieved by using different fluorophores or other fingerprinting labels. smCHA would find more applications in biomarker detection and DNA-based biosensing.
PMID 30428976
year 2018
Title Single-molecule Catalytic Hairpin Assembly for Rapid and Direct Quantification of Circulating miRNA Biomarkers
drug X
circulating V
survival X

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