The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
13 89443490 rs41464149 Gene expression of DERL1 (probeID ILMN_2209748) in breast tumors 3.30E-14 22522925
13 89443490 rs41464149 Gene expression of MRPL13 (probeID ILMN_1671158) in breast tumors 1.81E-13 22522925
13 89443490 rs41464149 Gene expression of C8ORF32 (probeID ILMN_1695491) in breast tumors 1.93E-12 22522925
13 89443490 rs41464149 Gene expression of C8ORF76 (probeID ILMN_1742074) in breast tumors 4.36E-12 22522925
13 89443490 rs41464149 Gene expression of MTERFD1 (probeID ILMN_2044617) in breast tumors 4.60E-10 22522925
13 89443490 rs41464149 Gene expression of UTP23 (probeID ILMN_1774860) in breast tumors 8.13E-10 22522925
13 89443490 rs41464149 Gene expression of KIAA0196 (probeID ILMN_1728676) in breast tumors 1.13E-09 22522925
13 89443490 rs41464149 Gene expression of NSMCE2 (probeID ILMN_1693210) in breast tumors 3.61E-08 22522925
13 89443490 rs41464149 Gene expression of GPR172A (probeID ILMN_2041577) in breast tumors 8.26E-08 22522925
13 89443490 rs41464149 Gene expression of PYCRL (probeID ILMN_1686387) in breast tumors 1.34E-07 22522925
13 89443490 rs41464149 Gene expression of SQLE (probeID ILMN_1772241) in breast tumors 1.49E-07 22522925
13 89443490 rs41464149 Gene expression of EXOSC4 (probeID ILMN_1745271) in breast tumors 3.41E-07 22522925
13 89443490 rs41464149 Gene expression of ATAD2 (probeID ILMN_2048700) in breast tumors 4.16E-07 22522925
13 89443490 rs41464149 Gene expression of UQCRB (probeID ILMN_1759453) in breast tumors 7.50E-07 22522925
13 89443490 rs41464149 Gene expression of TIGD5 (probeID ILMN_1705774) in breast tumors 1.02E-06 22522925
13 89443490 rs41464149 Gene expression of COMMD5 (probeID ILMN_2300396) in breast tumors 1.11E-06 22522925
13 89443490 rs41464149 Gene expression of MAF1 (probeID ILMN_1713985) in breast tumors 2.10E-06 22522925
13 89443490 rs41464149 Gene expression of FAM84B (probeID ILMN_1670807) in breast tumors 1.58E-05 22522925
13 89443490 rs41464149 Gene expression of CYC1 (probeID ILMN_1815115) in breast tumors 1.67E-05 22522925
13 89443490 rs41464149 Gene expression of NME1 (probeID ILMN_1741133) in breast tumors 3.03E-05 22522925
13 89443490 rs41464149 Gene expression of MSRA (probeID ILMN_2228180) in breast tumors 4.31E-05 22522925
13 89443490 rs41464149 Gene expression of ZC3H3 (probeID ILMN_1702389) in breast tumors 6.41E-05 22522925
13 89443490 rs41464149 Gene expression of FBXL6 (probeID ILMN_2352216) in breast tumors 8.15E-05 22522925
13 89443490 rs41464149 Gene expression of FAM91A1 (probeID ILMN_1777322) in breast tumors 8.53E-05 22522925
13 89443490 rs41464149 Gene expression of HS.194225 (probeID ILMN_1843949) in breast tumors 1.35E-04 22522925
13 89443490 rs41464149 Gene expression of MED30 (probeID ILMN_1671603) in breast tumors 1.67E-04 22522925
13 89443490 rs41464149 Gene expression of LOC642255 (probeID ILMN_1679867) in breast tumors 2.21E-04 22522925
13 89443490 rs41464149 Gene expression of HSF1 (probeID ILMN_1667060) in breast tumors 2.33E-04 22522925
13 89443490 rs41464149 Gene expression of ARGLU1 (probeID ILMN_1788468) in breast tumors 2.38E-04 22522925
13 89443490 rs41464149 Gene expression of PTK2 (probeID ILMN_1714364) in breast tumors 3.33E-04 22522925
13 89443490 rs41464149 Gene expression of MGC70857 (probeID ILMN_1693862) in breast tumors 3.97E-04 22522925
13 89443490 rs41464149 Gene expression of GRINA (probeID ILMN_1796490) in breast tumors 4.93E-04 22522925
13 89443490 rs41464149 Gene expression of CDKN2D (probeID ILMN_1748883) in breast tumors 5.35E-04 22522925
13 89443490 rs41464149 Gene expression of BNIP3L (probeID ILMN_1718961) in breast tumors 5.42E-04 22522925
13 89443490 rs41464149 Gene expression of NME1 (probeID ILMN_2414399) in breast tumors 7.05E-04 22522925
13 89443490 rs41464149 Gene expression of LOC642197 (probeID ILMN_1815303) in breast tumors 9.14E-04 22522925
Chr Position SNPID Disease/Trait name pvalue PMID

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