The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
1 56112774 rs10443215 Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel) 9.00E-06 24025145
1 94638711 rs1048866 Gene expression of ARHGAP29 (probeID ILMN_1751474) in breast tumors 3.29E-04 22522925
1 42908102 rs10493108 Gene expression of ZMYND12 (probeID ILMN_1655545) in breast tumors 7.62E-05 22522925
1 86125753 rs10493773 Gene expression of IL32 (probeID ILMN_2368530) in breast tumors 4.49E-04 22522925
1 89475135 rs10493821 Gene expression of GBP3 (probeID ILMN_1725314) in breast tumors 3.53E-20 22522925
1 25628073 rs1053359 Gene expression of SPEN (probeID ILMN_1802611) in breast tumors 2.96E-06 22522925
1 25628073 rs1053359 Gene expression of SYF2 (probeID ILMN_1660186) in breast tumors 1.85E-05 22522925
1 25628073 rs1053359 Gene expression of RERE (probeID ILMN_1802380) in breast tumors 1.14E-04 22522925
1 25628073 rs1053359 Gene expression of SRRM1 (probeID ILMN_1697670) in breast tumors 3.19E-04 22522925
1 53680090 rs1056425 Gene expression of C1ORF123 (probeID ILMN_2082130) in breast tumors 1.95E-13 22522925
1 172376632 rs10752946 Gene expression of MANBA (probeID ILMN_1800733) in breast tumors 7.19E-04 22522925
1 118751956 rs10754372 Breast size (bra cup size in women) 1.70E-05 22747683
1 113082974 rs10776755 Gene expression of ST7L (probeID ILMN_2410113) in breast tumors 1.07E-32 22522925
1 231280327 rs10779817 Breast size (bra cup size in women) 7.85E-05 22747683
1 63859046 rs10789138 Gene expression of ITGB3BP (probeID ILMN_1692790) in breast tumors 4.76E-17 22522925
1 186711910 rs10798056 Breast cancer 2.64E-05 20872241
1 86876231 rs10873780 Gene expression of CLCA2 (probeID ILMN_1803236) in breast tumors 7.53E-04 22522925
1 39507161 rs10888650 Gene expression of NDUFS5 (probeID ILMN_1776104) in breast tumors 1.10E-43 22522925
1 18827050 rs10907315 Gene expression of BUB1 (probeID ILMN_2202948) in breast tumors 4.88E-05 22522925
1 18827050 rs10907315 Gene expression of MCM10 (probeID ILMN_2413899) in breast tumors 6.61E-05 22522925
1 18827050 rs10907315 Gene expression of PKMYT1 (probeID ILMN_1766658) in breast tumors 1.27E-04 22522925
1 18827050 rs10907315 Gene expression of SGOL1 (probeID ILMN_1730825) in breast tumors 2.79E-04 22522925
1 18827050 rs10907315 Gene expression of CEP55 (probeID ILMN_1747016) in breast tumors 3.03E-04 22522925
1 18827050 rs10907315 Gene expression of FOXM1 (probeID ILMN_2344971) in breast tumors 4.75E-04 22522925
1 18827050 rs10907315 Gene expression of MELK (probeID ILMN_2212909) in breast tumors 7.08E-04 22522925
1 18827050 rs10907315 Gene expression of SGOL1 (probeID ILMN_2404906) in breast tumors 9.40E-04 22522925
1 118752830 rs10923519 Breast size (bra cup size in women) 2.09E-05 22747683
1 207835812 rs11118288 Breast size (bra cup size in women) 5.76E-05 22747683
1 80119734 rs11162773 Breast size (bra cup size in women) 3.40E-05 22747683
1 65979280 rs11208659 Breast cancer (Estrogen receptor negative breast cancer) 9.80E-05 22976474
1 45318752 rs11211044 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 2.00E-05 21245432
1 121280613 rs11249433 Breast cancer 2.00E-26 23535729
1 121280613 rs11249433 Breast cancer 6.74E-10 19330030
1 121280613 rs11249433 Breast cancer 7.00E-10 19330030
1 121280613 rs11249433 Breast cancer 1.13E-05 20872241
1 7532290 rs1149336 Puberty onset (breast development) 9.00E-07 24770850
1 27731651 rs11548323 Plasma estradiol concentration in women with breast cancer 1.70E-06 23518928
1 27731651 rs11548323 Estradiol plasma levels (breast cancer) 2.00E-06 23518928
1 114448389 rs11552449 Breast cancer 1.80E-08 23535729
1 114448389 rs11552449 Breast cancer 2.00E-08 23535729
1 114448389 rs11552449 Breast cancer (invasive breast cancer) 7.40E-07 23535729
1 114448389 rs11552449 Breast cancer (Estrogen receptor positive breast cancer) 9.40E-07 23535729
1 30945486 rs11583352 Breast cancer 2.20E-05 22923054
1 203054980 rs115855025 Breast cancer 8.90E-04 23555315
1 118739481 rs11588120 Breast size (bra cup size in women) 7.00E-05 22747683
1 38032607 rs116251390 Breast cancer (Estrogen receptor positive breast cancer) 2.60E-04 23555315
1 184736066 rs116728072 Breast size (bra cup size in women) 5.52E-05 22747683
1 65988493 rs1171279 Breast cancer (Estrogen receptor negative breast cancer) 9.12E-06 22976474
1 110260742 rs11807 Gene expression of GSTM1 (probeID ILMN_1762255) in breast tumors 4.32E-16 22522925
1 110260742 rs11807 Gene expression of GSTM1 (probeID ILMN_2391861) in breast tumors 2.56E-12 22522925
1 61303553 rs11808039 Breast size (bra cup size in women) 4.07E-05 22747683
1 19636041 rs11808495 Gene expression of ZHX1 (probeID ILMN_2402556) in breast tumors 2.72E-04 22522925
1 110084827 rs12023963 Gene expression of GNAI3 (probeID ILMN_1696003) in breast tumors 8.89E-06 22522925
1 75609049 rs12041465 Breast cancer 9.10E-04 20585626
1 7961294 rs12068202 Gene expression of UTS2 (probeID ILMN_1732198) in breast tumors 6.67E-19 22522925
1 183494214 rs12117885 Gene expression of SMG7 (probeID ILMN_2368597) in breast tumors 4.49E-67 22522925
1 80118678 rs12118039 Breast size (bra cup size in women) 6.95E-05 22747683
1 87779217 rs12118297 Breast cancer 4.30E-06 20585626
1 80911114 rs12118390 Plasma estradiol concentration in women with breast cancer 2.62E-07 23518928
1 80911114 rs12118390 Estradiol plasma levels (breast cancer) 3.00E-07 23518928
1 80118791 rs12121349 Breast size (bra cup size in women) 6.95E-05 22747683
1 40303627 rs12123609 Gene expression of TRIT1 (probeID ILMN_1727692) in breast tumors 2.85E-06 22522925
1 80119354 rs12130064 Breast size (bra cup size in women) 5.96E-05 22747683
1 80130708 rs12130599 Breast size (bra cup size in women) 9.60E-05 22747683
1 19622270 rs12133034 Gene expression of AKR7A3 (probeID ILMN_1718483) in breast tumors 9.14E-06 22522925
1 19622270 rs12133034 Gene expression of AKR7A3 (probeID ILMN_2145396) in breast tumors 1.31E-05 22522925
1 118752408 rs12136216 Breast size (bra cup size in women) 2.05E-05 22747683
1 118752640 rs12137016 Breast size (bra cup size in women) 2.14E-05 22747683
1 118752618 rs12140435 Breast size (bra cup size in women) 2.11E-05 22747683
1 156700651 rs12145743 Breast cancer 5.40E-04 23555315
1 173187775 rs1234317 Breast cancer 4.80E-05 22923054
1 29047110 rs12403009 Breast cancer 2.80E-04 21908515
1 160000435 rs12409352 Breast cancer 7.10E-05 23555315
1 33928758 rs12565140 Plasma estradiol concentration in women with breast cancer 2.52E-07 23518928
1 33928758 rs12565140 Estradiol plasma levels (breast cancer) 3.00E-07 23518928
1 61841528 rs12727993 Breast cancer 7.00E-04 21908515
1 88482229 rs12759463 Breast cancer (Estrogen receptor negative breast cancer) 6.85E-05 22976474
1 27158344 rs12760759 Gene expression of ARID1A (probeID ILMN_1797341) in breast tumors 1.31E-09 22522925
1 233501358 rs1294255 Breast cancer 1.90E-05 17903305
1 119583968 rs1325939 Gene expression of WARS2 (probeID ILMN_2323979) in breast tumors 2.46E-280 22522925
1 107624563 rs1335055 Gene expression of PRMT6 (probeID ILMN_1813834) in breast tumors 7.74E-24 22522925
1 203194834 rs137852607 Breast cancer 7.60E-04 23555315
1 114380886 rs138092829 Breast cancer (Estrogen receptor positive breast cancer) 1.60E-06 23555315
1 153520235 rs138355706 Breast cancer (Estrogen receptor positive breast cancer) 3.50E-04 23555315
1 11009844 rs138476809 Breast cancer 4.40E-04 23555315
1 247715570 rs138573467 Breast size (bra cup size in women) 9.22E-05 22747683
1 52344157 rs138608728 Breast cancer (Estrogen receptor positive breast cancer) 1.20E-05 23555315
1 164689762 rs1387389 Breast cancer early age of onset (diagnosed before age 40) 3.80E-06 23319801
1 164689762 rs1387389 Breast cancer (prognosis) 4.00E-06 23319801
1 247471846 rs139561401 Breast cancer 5.80E-05 23555315
1 53377291 rs139969883 Breast cancer 6.90E-05 23555315
1 120384066 rs140014891 Breast cancer 4.80E-04 23555315
1 201821443 rs1400875 Breast size (bra cup size in women) 2.57E-05 22747683
1 144922638 rs141066291 Breast cancer (Estrogen receptor negative breast cancer) 7.90E-05 23555315
1 153207274 rs1410863 Breast cancer total mortality 2.80E-06 22232737
1 153207274 rs1410863 Breast cancer recurrence 2.60E-05 22232737
1 227174318 rs141270350 Breast cancer (Estrogen receptor negative breast cancer) 1.20E-09 23555315
1 114442885 rs141417436 Breast cancer (Estrogen receptor negative breast cancer) 4.10E-05 23555315
1 22188296 rs142149919 Breast cancer 4.90E-07 23555315
1 145562149 rs143087712 Breast cancer (Estrogen receptor negative breast cancer) 9.30E-05 23555315
1 230822832 rs143526339 Breast cancer 1.50E-04 23555315
1 54476084 rs145889899 Breast cancer (Estrogen receptor negative breast cancer) 1.40E-07 23555315
1 54476084 rs145889899 Breast cancer 2.50E-07 23555315
1 74405053 rs146394040 Breast size (bra cup size in women) 3.19E-05 22747683
1 74345693 rs146697141 Breast size (bra cup size in women) 3.45E-05 22747683
1 110280921 rs146952826 Breast cancer (Estrogen receptor negative breast cancer) 4.40E-06 23555315
1 247769412 rs147517990 Breast cancer 8.10E-04 23555315
1 89726438 rs148301962 Breast cancer (Estrogen receptor positive breast cancer) 2.90E-05 23555315
1 149906999 rs148625178 Breast cancer 1.00E-03 23555315
1 21051116 rs149579175 Breast cancer 2.20E-04 23555315
1 75693501 rs149696907 Breast cancer 3.70E-05 23555315
1 1322654 rs151152085 Breast cancer (Estrogen receptor negative breast cancer) 6.10E-05 23555315
1 201850057 rs1517810 Breast size (bra cup size in women) 3.42E-05 22747683
1 245636059 rs1538472 Breast cancer 4.54E-05 pha002853
1 245636059 rs1538472 Breast cancer 7.67E-05 20872241
1 199441665 rs1572565 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 5.00E-05 21245432
1 7975789 rs161803 Gene expression of UTS2 (probeID ILMN_2236625) in breast tumors 8.69E-10 22522925
1 7999602 rs161811 Gene expression of UTS2 (probeID ILMN_1671818) in breast tumors 8.65E-19 22522925
1 36915105 rs16823025 Gene expression of C1ORF102 (probeID ILMN_2273572) in breast tumors 4.10E-39 22522925
1 36915105 rs16823025 Gene expression of C1ORF102 (probeID ILMN_1719835) in breast tumors 1.15E-05 22522925
1 183920191 rs16861794 Breast cancer risk (in BRCA1 mutation carriers) 2.19E-05 20852631
1 30621480 rs16866051 Breast size (bra cup size in women) 2.50E-05 22747683
1 6465054 rs17026985 Gene expression of HES2 (probeID ILMN_1709870) in breast tumors 1.75E-04 22522925
1 6465054 rs17026985 Gene expression of HES2 (probeID ILMN_2094266) in breast tumors 3.41E-04 22522925
1 51054346 rs17106306 Gene expression of FLJ12078 (probeID ILMN_1775444) in breast tumors 8.28E-05 22522925
1 107605611 rs1730865 Gene expression of PRMT6 (probeID ILMN_2234229) in breast tumors 9.23E-30 22522925
1 107605611 rs1730865 Gene expression of PRMT6 (probeID ILMN_1813834) in breast tumors 4.56E-07 22522925
1 3172702 rs17398063 Breast size (bra cup size in women) 2.54E-05 22747683
1 86900372 rs17409304 Gene expression of ODF2L (probeID ILMN_2325028) in breast tumors 2.21E-210 22522925
1 92012481 rs17501512 Gene expression of CDC7 (probeID ILMN_1741801) in breast tumors 5.40E-09 22522925
1 213659876 rs17702239 Breast cancer early age of onset 1.04E-04 18463975
1 11854476 rs1801131 Gene expression of MTHFR (probeID ILMN_1734830) in breast tumors 2.07E-05 22522925
1 231004221 rs185614261 Breast cancer 2.10E-05 23555315
1 27677375 rs187197622 Breast cancer (Estrogen receptor negative breast cancer) 3.80E-05 23555315
1 84471134 rs1886769 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 3.00E-05 21245432
1 63414144 rs1931080 Breast cancer total mortality 4.30E-04 22232737
1 63414144 rs1931080 Breast cancer (survival) 9.10E-04 22232737
1 152907785 rs1999885 Breast cancer 4.33E-07 20852631
1 36786521 rs200307550 Breast cancer (Estrogen receptor positive breast cancer) 1.40E-04 23555315
1 36786521 rs200307550 Breast cancer 2.60E-04 23555315
1 8397995 rs202161082 Breast cancer 1.50E-04 23555315
1 167849414 rs203849 Breast cancer 1.18E-05 24143190
1 44515696 rs2057968 Gene expression of SLC6A9 (probeID ILMN_1714445) in breast tumors 1.52E-06 22522925
1 219980552 rs2066418 Recurrence-free survival in breast cancer patients receiving tamoxifen therapy 2.87E-09 22180457
1 219980552 rs2066418 Response to tamoxifen in breast cancer 2.35E-08 22180457
1 110233081 rs2071487 Gene expression of GSTM1 (probeID ILMN_1762255) in breast tumors 5.64E-63 22522925
1 110233081 rs2071487 Gene expression of GSTM1 (probeID ILMN_2391861) in breast tumors 2.34E-23 22522925
1 168169452 rs2072776 Gene expression of TIPRL (probeID ILMN_2249282) in breast tumors 1.16E-70 22522925
1 168169452 rs2072776 Gene expression of TIPRL (probeID ILMN_1781457) in breast tumors 1.61E-11 22522925
1 168269338 rs2075976 Breast cancer (BRCA2-positive) 6.03E-04 21060860
1 9331973 rs2097520 Gene expression of H6PD (probeID ILMN_1721136) in breast tumors 1.56E-13 22522925
1 201826482 rs2132363 Breast size (bra cup size in women) 2.82E-05 22747683
1 118755263 rs2154354 Breast size (bra cup size in women) 2.03E-05 22747683
1 201826340 rs2172935 Breast size (bra cup size in women) 2.04E-05 22747683
1 16526529 rs221035 Gene expression of ARHGEF19 (probeID ILMN_1808999) in breast tumors 2.80E-06 22522925
1 233052341 rs2224402 Breast cancer 3.10E-04 17903305
1 12175658 rs2230624 Breast cancer 2.60E-04 23555315
1 111492859 rs2232043 Gene expression of C1ORF103 (probeID ILMN_1756811) in breast tumors 8.24E-29 22522925
1 201860626 rs2250377 Breast size (bra cup size in women) 3.55E-05 22747683
1 170240085 rs2254605 Gene expression of HS.135668 (probeID ILMN_1883844) in breast tumors 5.73E-06 22522925
1 201830247 rs2254614 Breast size (bra cup size in women) 2.94E-05 22747683
1 230898231 rs2282318 Gene expression of CAPN9 (probeID ILMN_1731073) in breast tumors 1.12E-05 22522925
1 204516025 rs2290854 Breast cancer (BRCA1-carriers) 2.70E-08 23544013
1 204516025 rs2290854 Breast Cancer in BRCA1 mutation carriers 1.00E-07 23544013
1 204516025 rs2290854 Breast Cancer in BRCA1 mutation carriers 1.21E-07 23544013
1 204516025 rs2290854 Breast Cancer in BRCA1 mutation carriers 1.39E-07 23544013
1 204516025 rs2290854 Breast Cancer in BRCA1 mutation carriers 3.58E-05 23544013
1 204516025 rs2290854 Breast Cancer in BRCA1 mutation carriers 2.15E-04 23544013
1 28224312 rs2295367 Gene expression of RPA2 (probeID ILMN_1753582) in breast tumors 3.14E-04 22522925
1 40307719 rs230310 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 6.00E-05 24325915
1 169788584 rs2420510 Breast cancer early age of onset 4.04E-04 18463975
1 201808469 rs2459761 Breast size (bra cup size in women) 3.74E-05 22747683
1 112960192 rs2483328 Gene expression of LOC643396 (probeID ILMN_1809094) in breast tumors 5.97E-13 22522925
1 201832864 rs2494115 Breast size (bra cup size in women) 4.12E-05 22747683
1 161014370 rs2516838 Gene expression of USF1 (probeID ILMN_1777982) in breast tumors 1.50E-11 22522925
1 161013121 rs2516839 Gene expression of USF1 (probeID ILMN_2353240) in breast tumors 2.21E-08 22522925
1 18052645 rs260514 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
1 39557772 rs260964 Musculoskeletal adverse events (MS-AEs) in women receiving AI adjuvant therapy for early breast cancer 8.32E-06 20876420
1 45376737 rs263966 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 4.00E-05 21245432
1 45358527 rs263975 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 2.00E-05 21245432
1 45360287 rs263977 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 2.00E-05 21245432
1 45460832 rs264011 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 3.00E-05 21245432
1 201818629 rs2644107 Breast size (bra cup size in women) 2.68E-05 22747683
1 201797535 rs2644109 Breast size (bra cup size in women) 4.73E-05 22747683
1 201802052 rs2644111 Breast size (bra cup size in women) 3.57E-05 22747683
1 201806106 rs2644112 Breast size (bra cup size in women) 3.57E-05 22747683
1 201864830 rs2644114 Breast size (bra cup size in women) 4.49E-05 22747683
1 201881284 rs2644121 Breast size (bra cup size in women) 4.98E-06 22747683
1 201810407 rs2644122 Breast size (bra cup size in women) 2.89E-05 22747683
1 201851492 rs2644134 Breast size (bra cup size in women) 4.00E-05 22747683
1 201856256 rs2644135 Breast size (bra cup size in women) 6.08E-05 22747683
1 201800511 rs2678204 Breast size (bra cup size in women) 3.85E-05 22747683
1 201787940 rs2678210 Breast size (bra cup size in women) 2.65E-05 22747683
1 53138456 rs269314 Gene expression of C1ORF163 (probeID ILMN_1757415) in breast tumors 3.91E-10 22522925
1 183516440 rs2702182 Gene expression of SMG7 (probeID ILMN_2368597) in breast tumors 7.18E-22 22522925
1 86807618 rs272489 Gene expression of ODF2L (probeID ILMN_2325028) in breast tumors 9.93E-12 22522925
1 231515201 rs2739513 Gene expression of C1ORF124 (probeID ILMN_1759464) in breast tumors 1.78E-09 22522925
1 114670969 rs2774307 Breast cancer early age of onset (diagnosed before age 40) 7.90E-06 23319801
1 114670969 rs2774307 Breast cancer (prognosis) 8.00E-06 23319801
1 225060249 rs2802732 Breast cancer recurrence 1.10E-04 22232737
1 43267130 rs2816600 Gene expression of CCDC23 (probeID ILMN_2050023) in breast tumors 2.74E-31 22522925
1 201882087 rs2819346 Breast size (bra cup size in women) 7.54E-06 22747683
1 201884288 rs2819347 Breast size (bra cup size in women) 6.91E-06 22747683
1 201884952 rs2819348 Breast size 3.00E-06 22747683
1 201884952 rs2819348 Breast size (bra cup size in women) 3.32E-06 22747683
1 201885026 rs2819349 Breast size (bra cup size in women) 7.12E-06 22747683
1 201885157 rs2819351 Breast size (bra cup size in women) 5.91E-06 22747683
1 201800868 rs2820295 Breast size (bra cup size in women) 3.64E-05 22747683
1 201913289 rs2820302 Breast size (bra cup size in women) 9.88E-05 22747683
1 201834944 rs2820309 Breast size (bra cup size in women) 1.26E-05 22747683
1 201838107 rs2820310 Breast size (bra cup size in women) 3.16E-05 22747683
1 201841476 rs2820311 Breast size (bra cup size in women) 2.81E-05 22747683
1 201869257 rs2820312 Breast size (bra cup size in women) 3.28E-05 22747683
1 201870221 rs2820313 Breast size (bra cup size in women) 2.11E-05 22747683
1 201872209 rs2820314 Breast size (bra cup size in women) 2.69E-05 22747683
1 201872264 rs2820315 Breast size (bra cup size in women) 2.52E-05 22747683
1 201811761 rs2820316 Breast size (bra cup size in women) 2.85E-05 22747683
1 201878537 rs2820317 Breast size (bra cup size in women) 7.53E-06 22747683
1 201878620 rs2820318 Breast size (bra cup size in women) 6.86E-06 22747683
1 201878650 rs2820319 Breast size (bra cup size in women) 7.29E-06 22747683
1 201880296 rs2820321 Breast size (bra cup size in women) 7.80E-06 22747683
1 201880300 rs2820322 Breast size (bra cup size in women) 7.78E-06 22747683
1 201883160 rs2820323 Breast size (bra cup size in women) 6.89E-06 22747683
1 58940596 rs338230 Breast cancer risk (in BRCA1 mutation carriers) 7.34E-05 20852631
1 112042149 rs3393 Gene expression of ADORA3 (probeID ILMN_1733259) in breast tumors 3.08E-09 22522925
1 26670444 rs36024412 Breast cancer 9.80E-04 23555315
1 44290530 rs37458 Breast cancer 1.40E-04 23555315
1 89435414 rs3753679 Gene expression of CCBL2 (probeID ILMN_1778371) in breast tumors 2.28E-34 22522925
1 114394463 rs3765598 Gene expression of PTPN22 (probeID ILMN_2246328) in breast tumors 8.45E-04 22522925
1 9127458 rs3765962 Gene expression of SLC2A5 (probeID ILMN_1671337) in breast tumors 1.91E-12 22522925
1 26582091 rs3795686 Breast cancer 7.60E-04 23555315
1 45307506 rs3795720 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 4.00E-05 21245432
1 36929988 rs3806289 Gene expression of C1ORF102 (probeID ILMN_2273572) in breast tumors 2.91E-06 22522925
1 181638511 rs3820260 Breast cancer 3.90E-05 17529974
1 220933100 rs3820354 Breast cancer 1.40E-05 22923054
1 46633874 rs3855959 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 3.00E-05 24325915
1 173156292 rs3861950 Breast cancer 1.10E-06 22923054
1 11856378 rs386545618 Breast cancer 1.60E-04 23555315
1 201052310 rs386638457 Breast cancer 8.70E-04 23555315
1 55984513 rs390415 Gene expression of CGA (probeID ILMN_1734176) in breast tumors 8.34E-04 22522925
1 169580510 rs3917733 Breast size (bra cup size in women) 9.37E-05 22747683
1 169580463 rs3917734 Breast size (bra cup size in women) 9.39E-05 22747683
1 201815854 rs3951628 Breast size (bra cup size in women) 2.84E-05 22747683
1 75221150 rs405445 Gene expression of CRYZ (probeID ILMN_1672389) in breast tumors 2.23E-23 22522925
1 233122127 rs41309639 Breast cancer 2.70E-05 23555315
1 165601365 rs4147596 Gene expression of MGST3 (probeID ILMN_1751956) in breast tumors 4.03E-04 22522925
1 204518842 rs4245739 Breast cancer 2.00E-12 23535733
1 204518842 rs4245739 Breast cancer (Estrogen receptor negative breast cancer) 2.10E-12 23535733
1 204518842 rs4245739 Breast cancer (Estrogen receptor positive vs. negative breast cancer) 2.80E-08 23535733
1 204518842 rs4245739 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 4.00E-06 24325915
1 204518842 rs4245739 Breast cancer (Triple negative breast cancer) 3.10E-05 23535733
1 31921862 rs4261154 Gene expression of SERINC2 (probeID ILMN_2111932) in breast tumors 4.16E-08 22522925
1 3171930 rs4308919 Breast size (bra cup size in women) 2.29E-05 22747683
1 3171809 rs4325088 Breast size (bra cup size in women) 2.34E-05 22747683
1 227552494 rs4329477 Breast cancer 6.98E-05 20872241
1 21784299 rs4385671 Gene expression of NBPF3 (probeID ILMN_1680348) in breast tumors 8.95E-04 22522925
1 156713558 rs4399146 Breast cancer 6.00E-04 23555315
1 154457855 rs4474240 Gene expression of SHE (probeID ILMN_2133996) in breast tumors 1.05E-05 22522925
1 95081445 rs4474258 Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU) 5.00E-06 24025145
1 60704783 rs4529739 Breast cancer survival 2.69E-06 20332263
1 45417184 rs452989 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 4.00E-05 21245432
1 28829700 rs4654362 Gene expression of RCC1 (probeID ILMN_2354211) in breast tumors 2.03E-18 22522925
1 118756760 rs4658975 Breast size (bra cup size in women) 4.27E-05 22747683
1 45966582 rs4660864 Gene expression of LOC126661 (probeID ILMN_1663791) in breast tumors 7.10E-10 22522925
1 156572914 rs4661200 Gene expression of GPATC4 (probeID ILMN_1655230) in breast tumors 5.89E-05 22522925
1 65515533 rs478665 Estradiol plasma levels (breast cancer) 1.00E-06 23518928
1 65515533 rs478665 Plasma estradiol concentration in women with breast cancer 1.45E-06 23518928
1 90233068 rs483517 Gene expression of LRRC8C (probeID ILMN_2094396) in breast tumors 3.91E-11 22522925
1 10447792 rs4846216 Gene expression of PGD (probeID ILMN_1794165) in breast tumors 2.86E-09 22522925
1 45452227 rs489676 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 3.00E-05 21245432
1 201887457 rs4950743 Breast size (bra cup size in women) 1.66E-05 22747683
1 204558070 rs4951407 Breast cancer (BRCA1-carriers) 3.35E-06 23544013
1 27684396 rs4970520 Gene expression of MAP3K6 (probeID ILMN_1694539) in breast tumors 7.98E-05 22522925
1 110268828 rs4970774 Gene expression of GSTM5 (probeID ILMN_1750790) in breast tumors 2.10E-06 22522925
1 71413498 rs500647 Breast cancer recurrence 2.10E-04 22232737
1 86885620 rs5026277 Gene expression of ODF2L (probeID ILMN_2325028) in breast tumors 5.62E-42 22522925
1 28535233 rs510379 Gene expression of ATPIF1 (probeID ILMN_1685978) in breast tumors 6.00E-09 22522925
1 567753 rs56207980 Gene expression of FOXO1 (probeID ILMN_1738816) in breast tumors 2.18E-04 22522925
1 108104525 rs56315812 Gene expression of VAV3 (probeID ILMN_2399463) in breast tumors 4.24E-227 22522925
1 24487402 rs56410843 Gene expression of IL28RA (probeID ILMN_2405324) in breast tumors 3.68E-11 22522925
1 99196281 rs56426758 Gene expression of SNX7 (probeID ILMN_2400613) in breast tumors 3.09E-14 22522925
1 186313108 rs58030082 Breast cancer 1.30E-05 23555315
1 3172763 rs59227786 Breast size (bra cup size in women) 2.92E-05 22747683
1 147020456 rs594206 Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU) 6.00E-07 24025145
1 173666446 rs59448693 Breast size (bra cup size in women) 4.53E-05 22747683
1 173666449 rs59789885 Breast size (bra cup size in women) 4.54E-05 22747683
1 185878632 rs60502467 Breast cancer 8.10E-04 23555315
1 30632983 rs61060437 Breast size (bra cup size in women) 4.63E-05 22747683
1 30623109 rs61614989 Breast size (bra cup size in women) 2.72E-05 22747683
1 10566215 rs616488 Breast cancer 2.00E-10 23535729
1 10566215 rs616488 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-08 23535733
1 10566215 rs616488 Breast cancer (invasive breast cancer) 1.70E-08 23535729
1 10566215 rs616488 Breast cancer (Estrogen receptor negative breast cancer) 5.40E-06 23535729
1 161018422 rs61733353 Breast cancer 2.80E-04 23555315
1 173339775 rs61826707 Breast size (bra cup size in women) 4.62E-05 22747683
1 173347628 rs61826709 Breast size (bra cup size in women) 4.68E-05 22747683
1 110996652 rs62623571 Breast cancer 2.80E-04 23555315
1 165180820 rs6426903 Gene expression of CSNK1E (probeID ILMN_1708858) in breast tumors 7.69E-04 22522925
1 151018861 rs6587552 Gene expression of CDC42SE1 (probeID ILMN_2349138) in breast tumors 7.53E-04 22522925
1 61295676 rs6587904 Breast size (bra cup size in women) 9.57E-05 22747683
1 65516055 rs6588109 Gene expression of HS.559665 (probeID ILMN_1839665) in breast tumors 3.40E-19 22522925
1 86921694 rs6657426 Gene expression of ODF2L (probeID ILMN_1702073) in breast tumors 1.44E-10 22522925
1 80449484 rs6660164 Breast cancer risk (in BRCA1 mutation carriers) 5.42E-05 20852631
1 110114229 rs6663547 Gene expression of GNAI3 (probeID ILMN_1696003) in breast tumors 2.74E-31 22522925
1 22088841 rs6667223 Gene expression of USP48 (probeID ILMN_1738572) in breast tumors 2.74E-15 22522925
1 68282901 rs6671283 Recurrence-free survival in breast cancer patients receiving tamoxifen therapy 4.63E-08 22180457
1 68282901 rs6671283 Response to tamoxifen in breast cancer 1.31E-05 22180457
1 61307277 rs6674001 Breast size (bra cup size in women) 6.29E-05 22747683
1 94447733 rs6675622 Gene expression of SH3GLB1 (probeID ILMN_1766045) in breast tumors 4.85E-04 22522925
1 202187176 rs6678914 Breast cancer 1.00E-08 23535733
1 202187176 rs6678914 Breast cancer (Estrogen receptor negative breast cancer) 1.40E-08 23535733
1 202187176 rs6678914 Breast cancer (Estrogen receptor positive vs. negative breast cancer) 1.60E-06 23535733
1 208830499 rs6680293 Breast cancer 2.00E-04 19219042
1 204566183 rs6682208 Breast cancer (BRCA1-carriers) 1.20E-07 23544013
1 204566183 rs6682208 Breast Cancer in BRCA1 mutation carriers 4.00E-07 23544013
1 204566183 rs6682208 Breast Cancer in BRCA1 mutation carriers 4.25E-07 23544013
1 204566183 rs6682208 Breast Cancer in BRCA1 mutation carriers 5.43E-06 23544013
1 204566183 rs6682208 Breast Cancer in BRCA1 mutation carriers 1.64E-04 23544013
1 204566183 rs6682208 Breast Cancer in BRCA1 mutation carriers 2.65E-04 23544013
1 3766441 rs6683156 Gene expression of KIAA0562 (probeID ILMN_2228453) in breast tumors 1.80E-18 22522925
1 46810842 rs6684274 Gene expression of NSUN4 (probeID ILMN_1716004) in breast tumors 9.16E-05 22522925
1 160146943 rs6685734 Gene expression of CASQ1 (probeID ILMN_1813949) in breast tumors 6.84E-04 22522925
1 80376527 rs6690979 Breast cancer risk (in BRCA1 mutation carriers) 9.05E-05 20852631
1 242854431 rs6692131 Gene expression of GAS2L2 (probeID ILMN_2045576) in breast tumors 7.21E-04 22522925
1 70887099 rs672203 Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU) 2.00E-06 24025145
1 226865254 rs708766 Breast cancer (hormonal receptor positive breast cancer) 3.65E-05 22951594
1 224723003 rs712078 Gene expression of PPP1R3D (probeID ILMN_1781198) in breast tumors 6.97E-05 22522925
1 224723003 rs712078 Gene expression of RAB22A (probeID ILMN_1786976) in breast tumors 1.67E-04 22522925
1 240427067 rs716603 Epirubicin-induced leukopenia in breast cancer 8.91E-05 21799462
1 179759426 rs72708636 Breast size (bra cup size in women) 2.30E-05 22747683
1 204246106 rs72749793 Breast size (bra cup size in women) 6.65E-05 22747683
1 213186688 rs74825882 Breast cancer (Estrogen receptor positive breast cancer) 7.60E-05 23555315
1 3169590 rs7513217 Breast size (bra cup size in women) 4.76E-05 22747683
1 3169791 rs7513410 Breast size (bra cup size in women) 2.09E-05 22747683
1 3170144 rs7513768 Breast size (bra cup size in women) 4.13E-05 22747683
1 118749926 rs7514644 Breast size (bra cup size in women) 3.23E-05 22747683
1 30621886 rs7516799 Breast size (bra cup size in women) 2.57E-05 22747683
1 59891821 rs7520470 Breast cancer 5.60E-05 21908515
1 85463738 rs7522851 Gene expression of MCOLN2 (probeID ILMN_1660462) in breast tumors 1.47E-09 22522925
1 58432755 rs7532719 Gene expression of SLC25A42 (probeID ILMN_2222880) in breast tumors 3.66E-04 22522925
1 61308100 rs7542054 Breast size (bra cup size in women) 9.18E-05 22747683
1 30622021 rs7545925 Breast size (bra cup size in women) 2.64E-05 22747683
1 40220806 rs7547787 Gene expression of PPIE (probeID ILMN_2326737) in breast tumors 2.07E-06 22522925
1 97867713 rs7548189 Breast cancer 4.61E-04 20872241
1 203768328 rs7552670 Breast cancer early age of onset 4.39E-04 18463975
1 154529421 rs7553602 Gene expression of SHE (probeID ILMN_2133996) in breast tumors 2.07E-19 22522925
1 173712244 rs76265477 Breast size (bra cup size in women) 9.93E-05 22747683
1 118441771 rs77073478 Breast cancer (Estrogen receptor negative breast cancer) 1.50E-05 23555315
1 45935056 rs781058 Gene expression of MUTYH (probeID ILMN_1714438) in breast tumors 6.92E-08 22522925
1 182922215 rs78487548 Breast cancer 4.20E-04 23555315
1 201845575 rs8024 Breast size (bra cup size in women) 3.34E-05 22747683
1 201865763 rs8028 Breast size (bra cup size in women) 4.70E-05 22747683
1 70934259 rs8179319 Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU) 6.32E-06 24025145
1 205762406 rs823154 Gene expression of NUCKS1 (probeID ILMN_1680692) in breast tumors 1.74E-06 22522925
1 53064012 rs835341 Gene expression of GPX7 (probeID ILMN_1726030) in breast tumors 2.90E-33 22522925
1 220959517 rs868494 Breast cancer 9.70E-05 22923054
1 156567496 rs879461 Gene expression of GPATCH4 (probeID ILMN_2383306) in breast tumors 1.04E-169 22522925
1 84622513 rs903263 Breast cancer (male breast cancer) 2.26E-07 23001122
1 84622513 rs903263 Breast cancer (male) 1.00E-06 23001122
1 201809918 rs903678 Breast size (bra cup size in women) 2.89E-05 22747683
1 113063125 rs910697 Gene expression of ST7L (probeID ILMN_1659926) in breast tumors 9.46E-77 22522925
1 61812773 rs9436636 Breast cancer 5.30E-05 22452962
1 203455902 rs9439 Breast cancer 1.90E-04 23555315
1 8386730 rs9628987 Breast cancer 5.00E-06 23468962
1 213037661 rs963328 Gene expression of LOC642946 (probeID ILMN_1782178) in breast tumors 3.68E-109 22522925
1 52836139 rs9633423 Gene expression of CC2D1B (probeID ILMN_2149935) in breast tumors 1.84E-37 22522925
1 52836139 rs9633423 Gene expression of CC2D1B (probeID ILMN_1690291) in breast tumors 9.66E-14 22522925
1 25688276 rs9689 Gene expression of TMEM50A (probeID ILMN_1745368) in breast tumors 7.08E-05 22522925
1 68603586 rs983034 Gene expression of GPR177 (probeID ILMN_2399769) in breast tumors 2.21E-18 22522925
Chr Position SNPID Disease/Trait name pvalue PMID

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