The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
11 118886117 rs10111 Gene expression of TRAPPC4 (probeID ILMN_1814650) in breast tumors 1.66E-22 22522925
11 19945852 rs10444227 Breast cancer 6.40E-06 22228098
11 19943353 rs10444256 Breast cancer 8.10E-05 22228098
11 27990119 rs10501093 Breast cancer 3.00E-05 17903305
11 126030615 rs10501858 Estradiol plasma levels (breast cancer) 1.00E-06 23518928
11 126030615 rs10501858 Plasma estradiol concentration in women with breast cancer 1.24E-06 23518928
11 68855595 rs1060435 Gene expression of SLC25A37 (probeID ILMN_1715969) in breast tumors 1.47E-04 22522925
11 14531236 rs10766183 Breast cancer 4.16E-04 22228098
11 14542577 rs10766184 Breast cancer 4.19E-04 22228098
11 25400364 rs10767369 Breast cancer 1.70E-06 20585626
11 25400364 rs10767369 Breast cancer 7.00E-05 19219042
11 2169014 rs10770125 Breast cancer 1.10E-04 23555315
11 127095382 rs10790871 Gene expression of ARFGAP1 (probeID ILMN_2406873) in breast tumors 8.02E-04 22522925
11 14516003 rs10832279 Breast cancer 2.72E-04 22228098
11 17095131 rs10832730 Breast cancer 6.74E-04 22228098
11 19941378 rs10833193 Breast cancer 7.40E-05 22228098
11 19942683 rs10833194 Breast cancer 7.00E-05 22228098
11 19953442 rs10833195 Breast cancer 1.40E-05 22228098
11 19953492 rs10833197 Breast cancer 1.30E-05 22228098
11 19956948 rs10833198 Breast cancer 4.40E-05 22228098
11 19957779 rs10833200 Breast cancer 4.60E-05 22228098
11 20158838 rs10833252 Breast cancer 7.12E-04 22228098
11 20378668 rs10833310 Breast cancer 1.10E-04 22228098
11 21233869 rs10833476 Breast cancer 8.17E-04 22228098
11 27338689 rs10835161 Breast cancer (BRCA1-carriers) 3.63E-05 23544013
11 27338689 rs10835161 Breast Cancer in BRCA1 mutation carriers 2.22E-04 23544013
11 107013563 rs10890650 Gene expression of ARL6IP1 (probeID ILMN_1708416) in breast tumors 4.03E-04 22522925
11 113211370 rs10891537 Gene expression of TTC12 (probeID ILMN_2183784) in breast tumors 3.74E-20 22522925
11 131057390 rs10894343 Gene expression of HS.564097 (probeID ILMN_1826616) in breast tumors 4.18E-04 22522925
11 64596916 rs10897529 Breast cancer (male breast cancer) 1.54E-07 23001122
11 76514335 rs10899287 Breast cancer 1.90E-04 21908515
11 14531459 rs11023245 Breast cancer 4.48E-04 22228098
11 17086632 rs11024142 Breast cancer 6.82E-04 22228098
11 17089005 rs11024145 Breast cancer 8.86E-04 22228098
11 17093408 rs11024146 Breast cancer 6.80E-04 22228098
11 17095565 rs11024147 Breast cancer 8.25E-04 22228098
11 17100265 rs11024150 Breast cancer 7.34E-04 22228098
11 17107816 rs11024152 Breast cancer 5.71E-04 22228098
11 17110249 rs11024153 Breast cancer 7.83E-04 22228098
11 19373169 rs11025105 Breast cancer 4.50E-04 22228098
11 19885124 rs11025299 Breast cancer 2.19E-04 22228098
11 19939841 rs11025325 Breast cancer 1.16E-04 22228098
11 19940506 rs11025326 Breast cancer 7.40E-05 22228098
11 19956131 rs11025328 Breast cancer 2.80E-05 22228098
11 19956289 rs11025329 Breast cancer 1.40E-05 22228098
11 19957675 rs11025331 Breast cancer 3.80E-05 22228098
11 19957715 rs11025332 Breast cancer 4.50E-05 22228098
11 20156114 rs11025404 Breast cancer 6.22E-04 22228098
11 20379276 rs11025524 Breast cancer 2.61E-04 22228098
11 8274699 rs11041827 Breast size (bra cup size in women) 5.51E-05 22747683
11 8275294 rs11041828 Breast size (bra cup size in women) 4.40E-05 22747683
11 8276735 rs11041829 Breast size (bra cup size in women) 5.16E-05 22747683
11 8282631 rs11041832 Breast size (bra cup size in women) 4.31E-05 22747683
11 8282786 rs11041833 Breast size (bra cup size in women) 3.39E-05 22747683
11 14539639 rs112169102 Breast cancer 4.69E-04 22228098
11 105444115 rs11226780 Gene expression of YAP1 (probeID ILMN_1709479) in breast tumors 4.73E-04 22522925
11 68860872 rs11228490 Gene expression of TPCN2 (probeID ILMN_1726873) in breast tumors 2.59E-10 22522925
11 58170291 rs11229410 Breast cancer 4.10E-04 20585626
11 87088544 rs11235127 Breast cancer 5.00E-05 17529967
11 96667409 rs1155410 Gene expression of LIG1 (probeID ILMN_1706779) in breast tumors 2.66E-04 22522925
11 98079209 rs11602759 Gene expression of MKI67 (probeID ILMN_1734827) in breast tumors 8.97E-04 22522925
11 47413733 rs11605672 Gene expression of SPI1 (probeID ILMN_1696463) in breast tumors 4.63E-04 22522925
11 65647737 rs116206676 Breast cancer 1.70E-04 23555315
11 107427713 rs116578571 Breast cancer (Estrogen receptor positive breast cancer) 7.00E-05 23555315
11 107427713 rs116578571 Breast cancer 2.70E-04 23555315
11 58449045 rs116868312 Breast size (bra cup size in women) 1.14E-05 22747683
11 88582231 rs117359754 Breast size (bra cup size in women) 8.12E-05 22747683
11 81776761 rs117746284 Breast size (bra cup size in women) 5.36E-05 22747683
11 129461171 rs11820646 Breast cancer 1.00E-09 23535729
11 129461171 rs11820646 Breast cancer 1.10E-09 23535729
11 129461171 rs11820646 Breast cancer (invasive breast cancer) 5.20E-07 23535729
11 129461171 rs11820646 Breast cancer (Estrogen receptor positive breast cancer) 3.60E-06 23535729
11 129461171 rs11820646 Breast cancer (Estrogen receptor negative breast cancer) 2.30E-04 23535733
11 12192623 rs11822285 Breast cancer (BRCA2-positive) 6.68E-05 21060860
11 108395594 rs11824250 Gene expression of EXPH5 (probeID ILMN_1712066) in breast tumors 9.14E-06 22522925
11 19948499 rs12225529 Breast cancer 1.28E-04 22228098
11 107887274 rs12277368 Gene expression of CUL5 (probeID ILMN_2176955) in breast tumors 2.09E-09 22522925
11 97162056 rs12285889 Breast cancer 9.04E-08 20852631
11 573554 rs12286521 Gene expression of LOC653591 (probeID ILMN_1768261) in breast tumors 4.90E-16 22522925
11 573554 rs12286521 Gene expression of HS.570403 (probeID ILMN_1860117) in breast tumors 8.71E-10 22522925
11 573554 rs12286521 Gene expression of C2ORF16 (probeID ILMN_1780840) in breast tumors 2.10E-09 22522925
11 573554 rs12286521 Gene expression of HS.539871 (probeID ILMN_1876622) in breast tumors 3.10E-06 22522925
11 573554 rs12286521 Gene expression of C3ORF65 (probeID ILMN_1747573) in breast tumors 2.61E-04 22522925
11 85596338 rs12290218 Gene expression of CREBZF (probeID ILMN_1784847) in breast tumors 5.60E-07 22522925
11 85596338 rs12290218 Gene expression of SFRS2B (probeID ILMN_1772702) in breast tumors 9.75E-05 22522925
11 85596338 rs12290218 Gene expression of TMEM123 (probeID ILMN_1724139) in breast tumors 5.01E-04 22522925
11 85596338 rs12290218 Gene expression of RNF214 (probeID ILMN_2357777) in breast tumors 5.37E-04 22522925
11 20384003 rs12360593 Breast cancer 9.12E-04 22228098
11 8276658 rs12362235 Breast size (bra cup size in women) 5.23E-05 22747683
11 20382949 rs12364576 Breast cancer 5.36E-04 22228098
11 97331886 rs12366141 Breast cancer 5.80E-05 21908515
11 19768852 rs12422062 Breast cancer 1.04E-04 22228098
11 74883577 rs12422149 Breast cancer 5.30E-05 23555315
11 19904490 rs12575413 Breast cancer 1.57E-04 22228098
11 130921333 rs12576258 Gene expression of NFKBIL2 (probeID ILMN_1781383) in breast tumors 2.82E-05 22522925
11 61600167 rs12577069 Breast size (bra cup size in women) 1.98E-05 22747683
11 74714008 rs12577127 Gene expression of XRRA1 (probeID ILMN_1789134) in breast tumors 1.16E-11 22522925
11 124440617 rs12792184 Breast cancer 7.08E-05 pha002853
11 93498833 rs1284108 Gene expression of C11ORF54 (probeID ILMN_1664738) in breast tumors 1.28E-05 22522925
11 74269630 rs1292504 Breast cancer 4.33E-05 20872241
11 20154539 rs1348303 Breast cancer 5.18E-04 22228098
11 21210324 rs1349819 Breast cancer 9.00E-04 22228098
11 19956593 rs1372990 Breast cancer 5.10E-05 22228098
11 60173847 rs1373060 Gene expression of MS4A14 (probeID ILMN_1726189) in breast tumors 4.36E-04 22522925
11 100593309 rs138809778 Breast size (bra cup size in women) 7.00E-05 22747683
11 88595965 rs141528456 Breast size (bra cup size in women) 7.54E-05 22747683
11 28057897 rs141828077 Breast cancer 2.90E-04 23555315
11 284328 rs142448057 Breast cancer (Estrogen receptor negative breast cancer) 4.30E-06 23555315
11 19765965 rs1425228 Breast cancer 1.70E-04 22228098
11 19765978 rs1425229 Breast cancer 1.68E-04 22228098
11 19766264 rs1425230 Breast cancer 1.36E-04 22228098
11 94819292 rs142969715 Breast size (bra cup size in women) 4.65E-05 22747683
11 57958038 rs143165965 Breast cancer 6.40E-05 23555315
11 4823434 rs1433901 Breast cancer risk (in BRCA1 mutation carriers) 3.08E-05 20852631
11 76834837 rs143494790 Breast cancer 9.70E-07 23555315
11 76834837 rs143494790 Breast cancer (Estrogen receptor positive breast cancer) 3.70E-04 23555315
11 59834583 rs143965382 Breast cancer 2.30E-04 23555315
11 124742934 rs144055440 Breast cancer 1.80E-04 23555315
11 103203905 rs144479687 Breast size (bra cup size in women) 7.67E-05 22747683
11 21258878 rs1454013 Breast cancer 9.43E-04 22228098
11 21259199 rs1454014 Breast cancer 4.93E-04 22228098
11 81582739 rs1459952 Breast cancer early age of onset 3.32E-04 18463975
11 17105942 rs146200696 Breast cancer 6.29E-04 22228098
11 62381076 rs146358003 Breast cancer 2.60E-05 23555315
11 94818006 rs147199353 Breast size (bra cup size in women) 4.27E-05 22747683
11 36119939 rs147309219 Breast cancer (Estrogen receptor positive breast cancer) 3.80E-06 23555315
11 36119939 rs147309219 Breast cancer 1.90E-04 23555315
11 17809762 rs149628273 Breast cancer 6.00E-04 23555315
11 17106183 rs149877011 Breast cancer 6.07E-04 22228098
11 92893825 rs1508608 Breast cancer 1.10E-04 21908515
11 14534825 rs1548074 Breast cancer 4.88E-04 22228098
11 129443834 rs1552820 Breast size (bra cup size in women) 4.13E-05 22747683
11 129447874 rs1552828 Breast size (bra cup size in women) 6.70E-05 22747683
11 97044431 rs1690595 Gene expression of TIMM17B (probeID ILMN_1813260) in breast tumors 9.44E-05 22522925
11 103600269 rs17101460 Breast size (bra cup size in women) 6.87E-05 22747683
11 107378135 rs17107068 Breast cancer recurrence 9.40E-04 22232737
11 69328512 rs17136641 Breast cancer 1.30E-12 20453838
11 116042851 rs1783232 Gene expression of TRIP13 (probeID ILMN_1796589) in breast tumors 2.90E-04 22522925
11 116042851 rs1783232 Gene expression of TMEM194 (probeID ILMN_2131336) in breast tumors 5.37E-04 22522925
11 116042851 rs1783232 Gene expression of CSE1L (probeID ILMN_1706238) in breast tumors 6.18E-04 22522925
11 124693144 rs1783885 Breast cancer risk (in BRCA1 mutation carriers) 7.49E-05 20852631
11 17116027 rs17847728 Breast cancer 7.93E-04 22228098
11 102187213 rs17882441 Breast cancer 5.40E-05 22923054
11 20648380 rs1805091 Breast cancer 4.50E-04 23555315
11 107675467 rs184602466 Breast cancer 7.90E-04 23555315
11 86188152 rs1870323 Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule) 2.00E-06 24025145
11 1251368 rs201500908 Breast cancer (Estrogen receptor positive breast cancer) 1.20E-04 23555315
11 16816195 rs201660932 Breast cancer 1.30E-04 23555315
11 19256365 rs201855427 Breast cancer (Estrogen receptor positive breast cancer) 3.70E-04 23555315
11 14466923 rs2034480 Breast cancer 7.65E-04 22228098
11 95428288 rs2049621 Breast cancer 9.00E-04 17529967
11 73611349 rs2067912 Gene expression of PAAF1 (probeID ILMN_1652753) in breast tumors 6.49E-19 22522925
11 10523519 rs2071018 Gene expression of MRVI1 (probeID ILMN_1766157) in breast tumors 5.46E-12 22522925
11 44093323 rs2074040 Gene expression of PHACS (probeID ILMN_2154287) in breast tumors 2.02E-19 22522925
11 113890708 rs2085421 Breast cancer 3.40E-06 22923054
11 19939764 rs2099895 Breast cancer 2.85E-04 22228098
11 2021075 rs2107425 Breast cancer 7.00E-06 17529967
11 19912781 rs2165798 Breast cancer 2.15E-04 22228098
11 14507449 rs2167160 Breast cancer 5.26E-04 22228098
11 76813968 rs2233547 Breast cancer 2.60E-04 23555315
11 76813968 rs2233547 Breast cancer (Estrogen receptor positive breast cancer) 3.50E-04 23555315
11 66335308 rs2242663 Breast cancer 5.60E-05 23555315
11 14476402 rs2256884 Breast cancer 7.78E-04 22228098
11 115100186 rs2275997 Gene expression of CADM1 (probeID ILMN_1680132) in breast tumors 2.68E-05 22522925
11 119145274 rs2276083 Gene expression of WDR82 (probeID ILMN_1679655) in breast tumors 1.60E-04 22522925
11 119145274 rs2276083 Gene expression of C3ORF37 (probeID ILMN_1815682) in breast tumors 4.44E-04 22522925
11 18416615 rs2403279 Gene expression of LDHC (probeID ILMN_2326324) in breast tumors 2.02E-16 22522925
11 18416615 rs2403279 Gene expression of LDHC (probeID ILMN_1745043) in breast tumors 1.04E-08 22522925
11 11507915 rs2403515 Breast cancer 3.00E-05 17529974
11 2641129 rs2412058 Breast cancer 8.00E-05 19219042
11 34490537 rs2420388 Gene expression of CAT (probeID ILMN_1651705) in breast tumors 7.33E-09 22522925
11 43911365 rs2434478 Breast cancer 1.50E-04 23555315
11 32562808 rs2450411 Breast cancer 1.32E-04 pha002853
11 18154120 rs2468842 Gene expression of SAAL1 (probeID ILMN_1658678) in breast tumors 1.06E-07 22522925
11 14519851 rs2575822 Breast cancer 4.75E-04 22228098
11 14521354 rs2575823 Breast cancer 4.68E-04 22228098
11 14472096 rs2575825 Breast cancer 7.65E-04 22228098
11 14475515 rs2575827 Breast cancer 7.70E-04 22228098
11 14484192 rs2575828 Breast cancer 8.32E-04 22228098
11 14485021 rs2575829 Breast cancer 8.12E-04 22228098
11 14485602 rs2575830 Breast cancer 8.03E-04 22228098
11 14486194 rs2575831 Breast cancer 8.10E-04 22228098
11 14488810 rs2575832 Breast cancer 8.04E-04 22228098
11 14494684 rs2575834 Breast cancer 7.77E-04 22228098
11 14496665 rs2575835 Breast cancer 2.64E-04 22228098
11 14497864 rs2575836 Breast cancer 5.61E-04 22228098
11 14498001 rs2575837 Breast cancer 5.60E-04 22228098
11 14498221 rs2575838 Breast cancer 5.50E-04 22228098
11 14552231 rs2575840 Breast cancer 4.55E-04 22228098
11 14552361 rs2575841 Breast cancer 4.29E-04 22228098
11 14554146 rs2575842 Breast cancer 5.02E-04 22228098
11 14471172 rs2575847 Breast cancer 7.65E-04 22228098
11 14539639 rs2575849 Breast cancer 4.69E-04 22228098
11 14533368 rs2575852 Breast cancer 4.93E-04 22228098
11 14533963 rs2575853 Breast cancer 4.54E-04 22228098
11 14508976 rs2575855 Breast cancer 5.22E-04 22228098
11 14501296 rs2575857 Breast cancer 5.49E-04 22228098
11 14510736 rs2575859 Breast cancer 5.12E-04 22228098
11 14514641 rs2575864 Breast cancer 4.82E-04 22228098
11 14524366 rs2597183 Breast cancer 4.29E-04 22228098
11 14524333 rs2597184 Breast cancer 4.40E-04 22228098
11 14517019 rs2597187 Breast cancer 4.80E-04 22228098
11 14516906 rs2597188 Breast cancer 4.79E-04 22228098
11 14507236 rs2597192 Breast cancer 5.43E-04 22228098
11 14491601 rs2597196 Breast cancer 8.17E-04 22228098
11 14489832 rs2597197 Breast cancer 7.92E-04 22228098
11 14485600 rs2597200 Breast cancer 7.69E-04 22228098
11 14485404 rs2597201 Breast cancer 8.00E-04 22228098
11 14477538 rs2597206 Breast cancer 7.79E-04 22228098
11 14472679 rs2597207 Breast cancer 7.60E-04 22228098
11 14472329 rs2597208 Breast cancer 6.74E-04 22228098
11 14547641 rs2597214 Breast cancer 4.34E-04 22228098
11 14534378 rs2597215 Breast cancer 4.89E-04 22228098
11 14533916 rs2597216 Breast cancer 4.91E-04 22228098
11 14532883 rs2597217 Breast cancer 5.12E-04 22228098
11 14530866 rs2597219 Breast cancer 4.49E-04 22228098
11 14527075 rs2597221 Breast cancer 4.55E-04 22228098
11 57352562 rs2649662 Gene expression of TIMM10 (probeID ILMN_1765332) in breast tumors 4.60E-148 22522925
11 57357305 rs2649663 Gene expression of TIMM10 (probeID ILMN_1765332) in breast tumors 3.18E-12 22522925
11 19948073 rs2707081 Breast cancer 7.67E-04 22228098
11 19908690 rs2707096 Breast cancer 1.86E-04 22228098
11 57321322 rs2729371 Gene expression of TIMM10 (probeID ILMN_1765332) in breast tumors 2.67E-35 22522925
11 8876852 rs2742552 Breast cancer 7.50E-04 23555315
11 65001679 rs2904980 Gene expression of POLA2 (probeID ILMN_1696713) in breast tumors 6.56E-04 22522925
11 129418236 rs3019823 Breast size (bra cup size in women) 5.91E-05 22747683
11 19949536 rs34249590 Breast cancer 1.20E-05 22228098
11 93469892 rs34591613 Breast cancer 5.30E-04 23555315
11 35174136 rs353620 Gene expression of CUL7 (probeID ILMN_1672393) in breast tumors 6.18E-04 22522925
11 20648364 rs3740870 Breast cancer 4.50E-04 23555315
11 118405835 rs3741324 Gene expression of TMEM25 (probeID ILMN_1651745) in breast tumors 2.55E-80 22522925
11 65211505 rs3741384 Breast cancer 1.00E-04 19219042
11 8270244 rs3794012 Breast size (bra cup size in women) 2.75E-05 22747683
11 41013623 rs380623 Breast cancer 3.52E-05 20872241
11 307036 rs3809112 Gene expression of IFITM2 (probeID ILMN_1673352) in breast tumors 2.64E-04 22522925
11 307036 rs3809112 Gene expression of IFITM3 (probeID ILMN_1805750) in breast tumors 3.00E-04 22522925
11 60163635 rs3816270 Gene expression of MS4A14 (probeID ILMN_1726189) in breast tumors 2.14E-12 22522925
11 73679655 rs3816824 Gene expression of UCP2 (probeID ILMN_1685625) in breast tumors 1.33E-07 22522925
11 1909006 rs3817198 Breast cancer 1.50E-11 23535729
11 1909006 rs3817198 Breast cancer 2.00E-11 23535729
11 1909006 rs3817198 Breast cancer 3.00E-09 17529967
11 1909006 rs3817198 Breast cancer 6.00E-04 20453838
11 5968728 rs386546370 Breast cancer 9.50E-04 23555315
11 65583066 rs3903072 Breast cancer 8.60E-12 23535729
11 65583066 rs3903072 Breast cancer 9.00E-12 23535729
11 65583066 rs3903072 Breast cancer (invasive breast cancer) 1.90E-09 23535729
11 65583066 rs3903072 Breast cancer (Estrogen receptor positive breast cancer) 4.70E-07 23535729
11 58125620 rs4127353 Breast cancer 5.70E-05 20585626
11 36596427 rs4151032 Breast cancer (Estrogen receptor positive breast cancer) 1.90E-04 23555315
11 1080391 rs41521547 Breast cancer 9.40E-04 23555315
11 8275127 rs4237769 Breast size (bra cup size in women) 5.59E-05 22747683
11 8275835 rs4237770 Breast size (bra cup size in women) 4.49E-05 22747683
11 8275004 rs4256972 Breast size (bra cup size in women) 4.86E-05 22747683
11 14444515 rs4369365 Breast cancer 8.72E-04 22228098
11 14450176 rs4403769 Breast cancer 5.40E-04 22228098
11 14556342 rs4463820 Breast cancer 5.04E-04 22228098
11 104878019 rs45585331 Breast cancer 1.30E-06 23555315
11 128425884 rs4564353 Breast cancer 4.20E-04 21908515
11 2717293 rs462402 "Breast cancer (BRCA2-positive), age of onset" 9.26E-04 21060860
11 19769196 rs4757012 Breast cancer 9.27E-04 22228098
11 19767614 rs4757841 Breast cancer 4.20E-05 22228098
11 19939214 rs4757860 Breast cancer 5.24E-04 22228098
11 19944878 rs4757861 Breast cancer 2.60E-04 22228098
11 20382453 rs4757940 Breast cancer 6.29E-04 22228098
11 131799525 rs476378 Gene expression of OIP5 (probeID ILMN_2196984) in breast tumors 8.71E-04 22522925
11 68476011 rs4930597 Gene expression of CPT1A (probeID ILMN_1710052) in breast tumors 1.44E-11 22522925
11 69329674 rs493786 Breast cancer (early onset) 1.23E-08 24493630
11 60174896 rs4938943 Gene expression of MS4A14 (probeID ILMN_2382500) in breast tumors 5.81E-06 22522925
11 656845 rs4963126 Gene expression of TMEM80 (probeID ILMN_1689868) in breast tumors 1.01E-08 22522925
11 656845 rs4963126 Gene expression of TMEM80 (probeID ILMN_1708482) in breast tumors 1.38E-07 22522925
11 25453482 rs5017351 Breast cancer 3.00E-04 20585626
11 838110 rs5030780 Gene expression of POLR2L (probeID ILMN_1670037) in breast tumors 4.80E-13 22522925
11 69334307 rs510754 Breast cancer (early onset) 1.46E-08 24493630
11 85473248 rs510948 Gene expression of SYTL2 (probeID ILMN_2336609) in breast tumors 1.55E-06 22522925
11 19945852 rs536403196 Breast cancer 6.40E-06 22228098
11 74689372 rs537054 Gene expression of RNF169 (probeID ILMN_1732969) in breast tumors 8.63E-16 22522925
11 69307695 rs537626 Breast cancer (early onset) 2.00E-15 24493630
11 69307695 rs537626 Breast cancer 1.60E-09 20453838
11 125446070 rs550276 Breast cancer risk (in BRCA1 mutation carriers) 9.27E-05 20852631
11 69331642 rs554219 Breast cancer 4.90E-14 20453838
11 117328639 rs558582 Gene expression of CSE1L (probeID ILMN_1665797) in breast tumors 4.69E-04 22522925
11 69332260 rs559664 Breast cancer (early onset) 1.43E-08 24493630
11 108196896 rs56009889 Breast cancer 4.10E-04 23555315
11 14516003 rs565684578 Breast cancer 2.72E-04 22228098
11 69318518 rs567488 Breast cancer (early onset) 3.95E-10 24493630
11 69318518 rs567488 Breast cancer 2.50E-06 20453838
11 126081336 rs587891 Gene expression of FOXRED1 (probeID ILMN_1762312) in breast tumors 5.18E-19 22522925
11 69403278 rs597587 Breast cancer 2.35E-04 23468962
11 69307463 rs612611 Breast cancer 1.80E-09 20453838
11 133892964 rs612737 Gene expression of AURKB (probeID ILMN_1684217) in breast tumors 2.25E-04 22522925
11 69328764 rs614367 Breast cancer 2.00E-63 23535729
11 69328764 rs614367 Breast cancer 2.20E-63 23535729
11 69328764 rs614367 Breast cancer 4.60E-16 20453838
11 69328764 rs614367 Breast cancer 3.00E-15 20453838
11 69328764 rs614367 Breast cancer (early onset) 1.00E-08 24493630
11 69328764 rs614367 Breast cancer cases only by family history 1.60E-04 20453838
11 68840399 rs61746574 Breast cancer 6.50E-04 23555315
11 126100932 rs618176 Gene expression of RPUSD4 (probeID ILMN_1730082) in breast tumors 2.99E-07 22522925
11 69308575 rs624797 Breast cancer 3.90E-12 20453838
11 69308575 rs624797 Breast cancer 2.10E-07 20453838
11 69308575 rs624797 Breast cancer cases only by family history 1.00E-03 20453838
11 94192103 rs625245 Gene expression of MRE11A (probeID ILMN_1709483) in breast tumors 2.18E-05 22522925
11 62567636 rs631310 Gene expression of SNORD25 (probeID ILMN_1784328) in breast tumors 3.61E-33 22522925
11 64528750 rs637332 Gene expression of SF1 (probeID ILMN_1776077) in breast tumors 4.25E-40 22522925
11 126134698 rs638766 Gene expression of TIRAP (probeID ILMN_2400603) in breast tumors 2.37E-04 22522925
11 64135298 rs645078 Gene expression of CCDC88B (probeID ILMN_1772208) in breast tumors 3.15E-15 22522925
11 14446161 rs6486194 Breast cancer 9.69E-04 22228098
11 14529874 rs6486197 Breast cancer 4.50E-04 22228098
11 15062177 rs6486219 Breast cancer 3.13E-08 20852631
11 17126038 rs6486349 Breast cancer 7.28E-04 22228098
11 69332670 rs657686 Breast cancer 5.40E-14 20453838
11 69330983 rs661204 Breast cancer 4.70E-14 20453838
11 69311250 rs662169 Breast cancer 4.60E-08 20453838
11 126481305 rs680610 Gene expression of SNRPA (probeID ILMN_1779399) in breast tumors 1.81E-04 22522925
11 69316881 rs680618 Breast cancer (early onset) 1.04E-10 24493630
11 69316881 rs680618 Breast cancer 1.90E-06 20453838
11 65653309 rs694994 Gene expression of CTSW (probeID ILMN_1794364) in breast tumors 1.12E-20 22522925
11 33724780 rs704697 Gene expression of CD59 (probeID ILMN_1724789) in breast tumors 2.53E-04 22522925
11 3179942 rs7102375 Gene expression of OSBPL5 (probeID ILMN_1802151) in breast tumors 1.79E-05 22522925
11 69143284 rs7102705 Breast size (bra cup size in women) 4.75E-06 22747683
11 69143284 rs7102705 Breast size 5.00E-06 22747683
11 125873102 rs7104745 Breast size 6.00E-06 22747683
11 125873102 rs7104745 Breast size (bra cup size in women) 6.14E-06 22747683
11 74569939 rs7105085 Gene expression of XRRA1 (probeID ILMN_1789134) in breast tumors 7.41E-50 22522925
11 129473690 rs7107217 Breast cancer 4.60E-07 22383897
11 129473690 rs7107217 Breast cancer 5.00E-07 22383897
11 129473690 rs7107217 Breast cancer (WHR>median) 2.50E-04 22383897
11 129473690 rs7107217 Breast cancer (Postmenopausal women) 4.00E-04 22383897
11 129473690 rs7107217 Breast cancer (BM>median) 8.30E-04 22383897
11 69150850 rs7108119 Breast size (bra cup size in women) 5.55E-06 22747683
11 19945595 rs7109223 Breast cancer 2.55E-04 22228098
11 19945890 rs7109389 Breast cancer 1.86E-04 22228098
11 20653783 rs7110148 Breast cancer risk (in BRCA1 mutation carriers) 7.55E-05 20852631
11 18405510 rs7112492 Gene expression of LDHC (probeID ILMN_2326324) in breast tumors 1.41E-57 22522925
11 18405510 rs7112492 Gene expression of LDHC (probeID ILMN_1745043) in breast tumors 1.91E-31 22522925
11 14453387 rs7112755 Breast cancer 5.93E-04 22228098
11 14548439 rs7112765 Breast cancer 3.93E-04 22228098
11 134247187 rs7113199 Gene expression of GLB1L2 (probeID ILMN_2144401) in breast tumors 1.38E-07 22522925
11 130637654 rs7116050 Breast cancer (BRCA2-positive) 1.09E-05 21060860
11 14035580 rs7116230 Gene expression of RUVBL1 (probeID ILMN_1656540) in breast tumors 1.42E-04 22522925
11 19947089 rs7117201 Breast cancer 8.99E-04 22228098
11 69150823 rs7118260 Breast size (bra cup size in women) 5.24E-06 22747683
11 89949097 rs7118543 Gene expression of VAX1 (probeID ILMN_1771058) in breast tumors 7.74E-04 22522925
11 33604133 rs7119677 Breast cancer 7.20E-04 21424380
11 18880428 rs7123482 Gene expression of CNOT1 (probeID ILMN_1669206) in breast tumors 9.66E-05 22522925
11 129417192 rs7123625 Breast size (bra cup size in women) 6.13E-05 22747683
11 103614438 rs7125780 Breast size (bra cup size in women) 8.78E-05 22747683
11 19766712 rs7126318 Breast cancer 1.43E-04 22228098
11 118953202 rs7127212 Gene expression of HMBS (probeID ILMN_1726306) in breast tumors 3.66E-08 22522925
11 130639957 rs7127732 Breast cancer (BRCA2-positive) 2.02E-05 21060860
11 14453382 rs7131590 Breast cancer 5.89E-04 22228098
11 19940916 rs716172 Breast cancer 2.55E-04 22228098
11 19940979 rs716173 Breast cancer 6.90E-05 22228098
11 17094121 rs72632986 Breast cancer 6.78E-04 22228098
11 17121089 rs72632987 Breast cancer 6.66E-04 22228098
11 69153272 rs73516616 Breast size (bra cup size in women) 8.05E-05 22747683
11 19452682 rs74847984 Breast size (bra cup size in women) 9.63E-05 22747683
11 55563035 rs75255607 Breast cancer (Estrogen receptor negative breast cancer) 4.70E-05 23555315
11 63987441 rs75295961 Breast cancer (Estrogen receptor negative breast cancer) 2.40E-05 23555315
11 14442428 rs7926861 Breast cancer 7.95E-04 22228098
11 133590335 rs7927483 Breast cancer risk (in BRCA1 mutation carriers) 1.08E-05 20852631
11 133590335 rs7927483 Breast cancer 4.26E-04 20852631
11 11024584 rs7928255 Breast cancer early age of onset 3.04E-04 18463975
11 119218712 rs7928348 Gene expression of PUS3 (probeID ILMN_1694147) in breast tumors 3.42E-04 22522925
11 122801318 rs7934182 Gene expression of HS.149514 (probeID ILMN_1824784) in breast tumors 7.26E-04 22522925
11 5642026 rs7936093 Gene expression of UBQLNL (probeID ILMN_1748907) in breast tumors 9.38E-05 22522925
11 94697142 rs7937776 Breast cancer (BRCA2-positive) 2.42E-05 21060860
11 17117691 rs7941165 Breast cancer 9.67E-04 22228098
11 91495099 rs7945313 Gene expression of SMARCA2 (probeID ILMN_1791702) in breast tumors 1.20E-04 22522925
11 8283316 rs7951420 Breast size (bra cup size in women) 6.75E-05 22747683
11 20156256 rs831468 Breast cancer 4.30E-04 22228098
11 40329199 rs896617 Breast cancer (BRCA2-positive) 2.11E-04 21060860
11 1941946 rs909116 Breast cancer 7.00E-07 20453838
11 1941946 rs909116 Breast cancer 7.30E-07 20453838
11 19946239 rs920719 Breast cancer 2.00E-04 22228098
11 19946348 rs920720 Breast cancer 2.72E-04 22228098
11 121443037 rs924746 Gene expression of SPAG5 (probeID ILMN_2141259) in breast tumors 6.82E-04 22522925
11 124409935 rs948725 Breast cancer 2.04E-04 pha002853
11 131354471 rs956993 Breast cancer 3.40E-04 19330027
11 39703309 rs9630178 Breast cancer 4.86E-04 21424380
Chr Position SNPID Disease/Trait name pvalue PMID

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