The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
17 9815187 rs1047334 Gene expression of RCVRN (probeID ILMN_1736453) in breast tumors 4.94E-20 22522925
17 4110024 rs10521130 Gene expression of TNN (probeID ILMN_1753789) in breast tumors 7.08E-04 22522925
17 68290082 rs11077488 Breast cancer 1.20E-05 22452962
17 32998577 rs11080292 Lobular breast cancer (menopausal hormone therapy interaction) 9.30E-06 24080446
17 33564409 rs11080326 Gene expression of SLFN5 (probeID ILMN_1769550) in breast tumors 2.56E-19 22522925
17 8383838 rs111570631 Breast cancer (Estrogen receptor positive breast cancer) 1.90E-04 23555315
17 11166786 rs112380460 Breast cancer 1.30E-04 23555315
17 1683284 rs1133109 Gene expression of SMYD4 (probeID ILMN_2086238) in breast tumors 6.44E-16 22522925
17 31361369 rs114419658 Breast size (bra cup size in women) 8.86E-05 22747683
17 61897716 rs115348708 Breast cancer (Estrogen receptor negative breast cancer) 1.70E-05 23555315
17 27417925 rs115455253 Breast cancer (Estrogen receptor negative breast cancer) 9.30E-05 23555315
17 4539171 rs11568113 Gene expression of PRPF8 (probeID ILMN_1738677) in breast tumors 7.05E-05 22522925
17 74625633 rs115756441 Breast cancer (Estrogen receptor positive breast cancer) 2.40E-06 23555315
17 46959208 rs11650158 Gene expression of UBE2Z (probeID ILMN_1692168) in breast tumors 8.41E-11 22522925
17 3357216 rs11651737 Gene expression of CSE1L (probeID ILMN_1762275) in breast tumors 3.54E-04 22522925
17 15327441 rs11652425 Gene expression of FAM159A (probeID ILMN_2185675) in breast tumors 1.91E-04 22522925
17 15327441 rs11652425 Gene expression of GRAP (probeID ILMN_2264011) in breast tumors 4.79E-04 22522925
17 5997476 rs11654856 Gene expression of HS.371609 (probeID ILMN_1865764) in breast tumors 2.09E-04 22522925
17 32989538 rs11654964 Lobular breast cancer (menopausal hormone therapy interaction) 3.00E-06 24080446
17 10726553 rs11655918 Breast size (bra cup size in women) 8.41E-05 22747683
17 33189292 rs11658261 Gene expression of CCT6B (probeID ILMN_1699610) in breast tumors 4.40E-04 22522925
17 6063997 rs117466290 Breast size (bra cup size in women) 3.46E-05 22747683
17 39974440 rs117897485 Breast cancer 6.50E-04 23555315
17 11259514 rs11867705 Gene expression of PLK1 (probeID ILMN_1736176) in breast tumors 2.27E-04 22522925
17 198698 rs11869174 Breast cancer 4.28E-05 20872241
17 198698 rs11869174 Breast cancer 1.23E-04 pha002853
17 11977952 rs12051769 Breast cancer 1.70E-06 20453838
17 30805795 rs12162135 Breast cancer 7.10E-05 22923054
17 6300035 rs12449441 Gene expression of MCM10 (probeID ILMN_2413898) in breast tumors 1.95E-04 22522925
17 6300035 rs12449441 Gene expression of KIF4A (probeID ILMN_1799667) in breast tumors 2.04E-04 22522925
17 38068621 rs12450091 Breast cancer 2.00E-04 23555315
17 13139119 rs12451931 Breast cancer 5.10E-05 22923054
17 2320175 rs12452567 Gene expression of HSP90AB1 (probeID ILMN_1673711) in breast tumors 5.01E-04 22522925
17 12880949 rs12453248 Gene expression of RACGAP1 (probeID ILMN_2077550) in breast tumors 6.44E-04 22522925
17 57054245 rs12600349 Gene expression of RAD51C (probeID ILMN_1760635) in breast tumors 5.57E-07 22522925
17 37201755 rs12600916 Gene expression of PLXDC1 (probeID ILMN_1815568) in breast tumors 3.38E-05 22522925
17 10414796 rs12601461 Gene expression of LOC650215 (probeID ILMN_1743711) in breast tumors 3.94E-04 22522925
17 47034419 rs12603969 Breast size (bra cup size in women) 3.00E-05 22747683
17 53030226 rs12936860 Gene expression of COX11 (probeID ILMN_1666280) in breast tumors 1.66E-08 22522925
17 8046147 rs12937495 Breast cancer (Estrogen receptor negative breast cancer) 8.20E-05 23555315
17 16186100 rs12938397 Gene expression of RBM5 (probeID ILMN_1786893) in breast tumors 7.26E-04 22522925
17 9260180 rs12940711 Gene expression of HELLS (probeID ILMN_1783610) in breast tumors 4.14E-04 22522925
17 9265134 rs12944498 Gene expression of CDCA5 (probeID ILMN_1683450) in breast tumors 2.49E-06 22522925
17 9265134 rs12944498 Gene expression of CDKN3 (probeID ILMN_1666305) in breast tumors 1.57E-04 22522925
17 9265134 rs12944498 Gene expression of TROAP (probeID ILMN_1700337) in breast tumors 6.34E-04 22522925
17 9265134 rs12944498 Gene expression of FAM83D (probeID ILMN_1781943) in breast tumors 9.10E-04 22522925
17 6345236 rs12946821 Breast size (bra cup size in women) 5.20E-05 22747683
17 33332629 rs12948362 Gene expression of LIG3 (probeID ILMN_1660582) in breast tumors 2.64E-05 22522925
17 10268191 rs12951002 Gene expression of RAD54B (probeID ILMN_1722127) in breast tumors 2.49E-05 22522925
17 10268191 rs12951002 Gene expression of GTPBP4 (probeID ILMN_1742577) in breast tumors 3.72E-05 22522925
17 260747 rs12951902 Gene expression of C17ORF97 (probeID ILMN_1713803) in breast tumors 3.54E-14 22522925
17 260747 rs12951902 Gene expression of C17ORF97 (probeID ILMN_1707137) in breast tumors 3.75E-13 22522925
17 9262182 rs12953050 Gene expression of ZBTB4 (probeID ILMN_1795905) in breast tumors 1.85E-05 22522925
17 9262182 rs12953050 Gene expression of CENPA (probeID ILMN_1801257) in breast tumors 1.94E-05 22522925
17 9262182 rs12953050 Gene expression of MARS (probeID ILMN_1799819) in breast tumors 1.43E-04 22522925
17 9262182 rs12953050 Gene expression of HJURP (probeID ILMN_1703906) in breast tumors 3.66E-04 22522925
17 17333685 rs139159738 Breast size (bra cup size in women) 5.10E-05 22747683
17 7671294 rs139308934 Breast cancer 3.30E-04 23555315
17 27959223 rs140696098 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-05 23555315
17 80137043 rs140732712 Breast cancer (Estrogen receptor positive breast cancer) 2.90E-04 23555315
17 26940561 rs140829639 Breast cancer (Estrogen receptor positive breast cancer) 2.70E-04 23555315
17 43702792 rs140990874 Breast cancer (BRCA1 and BRCA2-carriers) 2.84E-11 23544013
17 43702792 rs140990874 Breast cancer (BRCA1-carriers) 6.67E-08 23544013
17 43702792 rs140990874 Breast cancer (BRCA2-carriers) 8.26E-05 23544013
17 38418816 rs141184179 Breast cancer 3.00E-04 23555315
17 34191290 rs141245415 Breast cancer (Estrogen receptor negative breast cancer) 6.90E-05 23555315
17 72926682 rs141455683 Breast cancer 3.00E-04 23555315
17 56389516 rs144106922 Breast cancer 7.10E-05 23555315
17 76565555 rs144524797 Breast cancer 1.60E-04 23555315
17 72613389 rs144682080 Breast cancer (Estrogen receptor positive breast cancer) 1.90E-04 23555315
17 78972930 rs144716331 Breast cancer 1.50E-04 23555315
17 48600427 rs146276624 Breast cancer 1.30E-04 23555315
17 41106983 rs146878083 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-04 23555315
17 43702778 rs148105894 Breast cancer (BRCA1 and BRCA2-carriers) 2.67E-11 23544013
17 43702778 rs148105894 Breast cancer (BRCA1-carriers) 6.05E-08 23544013
17 43702778 rs148105894 Breast cancer (BRCA2-carriers) 8.70E-05 23544013
17 45904542 rs149631185 Breast cancer 9.90E-04 23555315
17 72366770 rs150121973 Breast cancer (Estrogen receptor negative breast cancer) 4.60E-05 23555315
17 43691152 rs151229577 Breast cancer (BRCA1 and BRCA2-carriers) 1.89E-11 23544013
17 43691152 rs151229577 Breast cancer (BRCA1-carriers) 2.90E-07 23544013
17 43691152 rs151229577 Breast cancer (BRCA2-carriers) 7.84E-06 23544013
17 11306268 rs1513743 Gene expression of SNRPC (probeID ILMN_2086064) in breast tumors 2.79E-05 22522925
17 11306268 rs1513743 Gene expression of MRS2 (probeID ILMN_1778677) in breast tumors 9.62E-04 22522925
17 8662026 rs1553062 Gene expression of MYH10 (probeID ILMN_1815154) in breast tumors 2.40E-04 22522925
17 6568494 rs1557916 Gene expression of SPARCL1 (probeID ILMN_1795251) in breast tumors 2.84E-04 22522925
17 5190108 rs1602914 Gene expression of RABEP1 (probeID ILMN_1719622) in breast tumors 1.41E-06 22522925
17 34426245 rs1634508 Gene expression of C12ORF49 (probeID ILMN_2161556) in breast tumors 2.46E-05 22522925
17 31367597 rs16556 Breast size (bra cup size in women) 8.75E-05 22747683
17 57050365 rs16943326 Breast cancer 4.30E-05 pha002853
17 2116798 rs16952025 Gene expression of SRR (probeID ILMN_1753515) in breast tumors 3.41E-16 22522925
17 530339 rs16954064 Gene expression of CENPA (probeID ILMN_2392472) in breast tumors 2.07E-04 22522925
17 31365205 rs16967911 Breast size (bra cup size in women) 8.65E-05 22747683
17 32989786 rs16970162 Lobular breast cancer (menopausal hormone therapy interaction) 8.60E-06 24080446
17 43664545 rs1724396 Breast cancer (BRCA1 and BRCA2-carriers) 3.25E-11 23544013
17 43664545 rs1724396 Breast cancer (BRCA1-carriers) 5.85E-07 23544013
17 43664545 rs1724396 Breast cancer (BRCA2-carriers) 6.12E-06 23544013
17 42918966 rs17544947 Breast cancer (BRCA1-carriers) 1.31E-05 23544013
17 42918966 rs17544947 Breast Cancer in BRCA1 mutation carriers 5.67E-05 23544013
17 44052009 rs17572361 Gene expression of MGC57346 (probeID ILMN_1784428) in breast tumors 2.05E-13 22522925
17 44071089 rs17573175 Gene expression of MGC57346 (probeID ILMN_1784428) in breast tumors 8.49E-43 22522925
17 19867331 rs17604987 Gene expression of AKAP10 (probeID ILMN_1718808) in breast tumors 1.92E-06 22522925
17 4214005 rs17764251 Gene expression of AGXT2L2 (probeID ILMN_1673529) in breast tumors 3.25E-04 22522925
17 4214005 rs17764251 Gene expression of TNFRSF14 (probeID ILMN_1697409) in breast tumors 4.00E-04 22522925
17 10081621 rs17810641 Gene expression of KCTD5 (probeID ILMN_1672728) in breast tumors 2.08E-04 22522925
17 28295809 rs185083507 Breast cancer (Estrogen receptor positive breast cancer) 2.10E-04 23555315
17 12982299 rs1859972 Gene expression of OSBPL3 (probeID ILMN_1735798) in breast tumors 7.45E-04 22522925
17 16347245 rs185998385 Breast cancer 5.80E-04 23555315
17 78032753 rs187993089 Breast cancer 7.40E-04 23555315
17 11395390 rs1974700 Gene expression of DKC1 (probeID ILMN_1671257) in breast tumors 4.25E-06 22522925
17 44974347 rs197932 Breast cancer 4.90E-04 23555315
17 44773783 rs199441 Breast cancer (BRCA1 and BRCA2-carriers) 5.86E-11 23544013
17 44773783 rs199441 Breast cancer (BRCA1-carriers) 3.42E-07 23544013
17 44773783 rs199441 Breast cancer (BRCA2-carriers) 2.73E-05 23544013
17 72875670 rs199975806 Breast cancer (Estrogen receptor positive breast cancer) 3.50E-04 23555315
17 43247151 rs200017941 Breast cancer (Estrogen receptor negative breast cancer) 5.40E-05 23555315
17 78055521 rs200815406 Breast cancer (Estrogen receptor positive breast cancer) 2.30E-05 23555315
17 45891202 rs201063776 Breast cancer 3.00E-04 23555315
17 12844126 rs2072256 Gene expression of ZBTB4 (probeID ILMN_2097793) in breast tumors 8.05E-06 22522925
17 12844126 rs2072256 Gene expression of CYBRD1 (probeID ILMN_1712305) in breast tumors 1.11E-05 22522925
17 12844126 rs2072256 Gene expression of CYBRD1 (probeID ILMN_2087692) in breast tumors 1.34E-05 22522925
17 12844126 rs2072256 Gene expression of KIF14 (probeID ILMN_1808071) in breast tumors 9.75E-05 22522925
17 12844126 rs2072256 Gene expression of CRY2 (probeID ILMN_1796180) in breast tumors 5.58E-04 22522925
17 48274291 rs2075555 Breast cancer 8.00E-08 17903305
17 48274291 rs2075555 Breast cancer 8.30E-08 17903305
17 54557591 rs2165759 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
17 29668808 rs2189525 Gene expression of EVI2A (probeID ILMN_2369018) in breast tumors 6.81E-44 22522925
17 7140606 rs222852 Gene expression of C17ORF81 (probeID ILMN_2341690) in breast tumors 1.39E-25 22522925
17 7140606 rs222852 Gene expression of C17ORF81 (probeID ILMN_1672554) in breast tumors 3.46E-16 22522925
17 7140606 rs222852 Gene expression of C17ORF81 (probeID ILMN_1705414) in breast tumors 4.15E-14 22522925
17 74710572 rs2240774 Gene expression of MXRA7 (probeID ILMN_1743836) in breast tumors 2.21E-09 22522925
17 74710572 rs2240774 Gene expression of MXRA7 (probeID ILMN_1692077) in breast tumors 8.24E-04 22522925
17 80680449 rs2243523 Gene expression of FN3KRP (probeID ILMN_1652333) in breast tumors 2.05E-18 22522925
17 3525186 rs224507 Breast size (bra cup size in women) 9.42E-05 22747683
17 3487962 rs224538 Breast size (bra cup size in women) 9.95E-05 22747683
17 5199100 rs2251155 Gene expression of RABEP1 (probeID ILMN_1719622) in breast tumors 6.04E-27 22522925
17 42223068 rs227580 Gene expression of TMUB2 (probeID ILMN_2311779) in breast tumors 2.43E-29 22522925
17 36932200 rs228293 Gene expression of PIP4K2B (probeID ILMN_1741017) in breast tumors 7.14E-06 22522925
17 65717525 rs2291284 Breast cancer 1.40E-05 23555315
17 15211652 rs230894 Gene expression of TEKT3 (probeID ILMN_1799099) in breast tumors 1.06E-09 22522925
17 6237099 rs2309567 Gene expression of CCNDBP1 (probeID ILMN_1702247) in breast tumors 8.18E-06 22522925
17 6237099 rs2309567 Gene expression of LAPTM4B (probeID ILMN_1680196) in breast tumors 8.18E-05 22522925
17 6237099 rs2309567 Gene expression of HS.20255 (probeID ILMN_1858599) in breast tumors 1.20E-04 22522925
17 6237099 rs2309567 Gene expression of STIP1 (probeID ILMN_1789510) in breast tumors 2.45E-04 22522925
17 6237099 rs2309567 Gene expression of FUCA1 (probeID ILMN_1752728) in breast tumors 3.16E-04 22522925
17 13144762 rs2322858 Gene expression of TUBA1B (probeID ILMN_1800261) in breast tumors 5.82E-04 22522925
17 4878960 rs238228 Gene expression of RNF167 (probeID ILMN_1794726) in breast tumors 2.40E-22 22522925
17 4878960 rs238228 Gene expression of RCBTB2 (probeID ILMN_2148668) in breast tumors 1.24E-04 22522925
17 4878960 rs238228 Gene expression of ECE2 (probeID ILMN_1762883) in breast tumors 1.55E-04 22522925
17 4856580 rs238239 Gene expression of HS.202577 (probeID ILMN_1878029) in breast tumors 1.11E-04 22522925
17 38868480 rs2429552 Gene expression of SMARCE1 (probeID ILMN_1747857) in breast tumors 6.68E-09 22522925
17 18265264 rs2461838 Gene expression of SHMT1 (probeID ILMN_1743784) in breast tumors 9.35E-05 22522925
17 3521902 rs2472029 Breast size (bra cup size in women) 8.90E-05 22747683
17 54967528 rs2525998 Breast cancer recurrence 2.90E-04 22232737
17 54967528 rs2525998 Breast cancer total mortality 6.70E-04 22232737
17 5213391 rs2585266 Gene expression of ZNF232 (probeID ILMN_2139351) in breast tumors 8.55E-04 22522925
17 77852795 rs2587493 Breast cancer early age of onset 3.36E-04 18463975
17 30887000 rs2640828 Breast cancer 4.78E-05 20872241
17 7183362 rs2654185 Gene expression of C17ORF81 (probeID ILMN_1672554) in breast tumors 1.67E-04 22522925
17 3518976 rs2660974 Breast size (bra cup size in women) 6.22E-05 22747683
17 76221008 rs2661694 Gene expression of BIRC5 (probeID ILMN_2349459) in breast tumors 1.62E-06 22522925
17 65538502 rs2706691 Gene expression of HS.332059 (probeID ILMN_1878232) in breast tumors 9.40E-04 22522925
17 44351929 rs2732705 Gene expression of MAPK8IP1 (probeID ILMN_1680434) in breast tumors 7.41E-28 22522925
17 42335888 rs28931583 Breast cancer (Estrogen receptor negative breast cancer) 1.40E-05 23555315
17 11442657 rs2908964 Gene expression of TTK (probeID ILMN_1788166) in breast tumors 4.63E-05 22522925
17 66531149 rs2952270 Gene expression of PRKAR1A (probeID ILMN_2389590) in breast tumors 3.96E-111 22522925
17 26673316 rs3093704 Gene expression of POLDIP2 (probeID ILMN_1743499) in breast tumors 5.53E-05 22522925
17 77909438 rs3169601 Gene expression of TBC1D16 (probeID ILMN_1758457) in breast tumors 5.27E-05 22522925
17 42259463 rs3180912 Gene expression of TMUB2 (probeID ILMN_2311779) in breast tumors 5.36E-05 22522925
17 59391379 rs34578071 Breast cancer 8.00E-06 23468962
17 74278548 rs347674 Gene expression of FAM100B (probeID ILMN_1775498) in breast tumors 2.84E-05 22522925
17 66270082 rs35397826 Breast cancer 5.90E-05 23555315
17 10726149 rs3744572 Breast size (bra cup size in women) 8.52E-05 22747683
17 76793825 rs3744800 Gene expression of USP36 (probeID ILMN_1697227) in breast tumors 2.48E-77 22522925
17 59391379 rs3785856 Breast cancer 8.00E-06 23468962
17 9090224 rs3785982 Breast cancer early age of onset (diagnosed before age 40) 7.90E-06 23319801
17 9090224 rs3785982 Breast cancer (prognosis) 8.00E-06 23319801
17 51901084 rs3803825 Breast cancer (BRCA2-positive) 1.18E-04 21060860
17 51901084 rs3803825 Breast cancer 1.52E-04 21060860
17 57061238 rs3809724 Breast cancer 9.48E-05 pha002853
17 14107579 rs3826366 Gene expression of PIK3IP1 (probeID ILMN_1719986) in breast tumors 4.81E-04 22522925
17 38128648 rs3859192 Gene expression of GSDMA (probeID ILMN_1776115) in breast tumors 7.03E-23 22522925
17 36022817 rs4074770 Breast cancer 3.02E-05 20872241
17 43728137 rs422112 Gene expression of PLEKHM1 (probeID ILMN_1709549) in breast tumors 1.13E-19 22522925
17 7016239 rs425694 Gene expression of ASGR2 (probeID ILMN_1694966) in breast tumors 2.18E-04 22522925
17 8693055 rs4442859 Gene expression of KLRG2 (probeID ILMN_2224657) in breast tumors 4.23E-04 22522925
17 51862028 rs4483901 Breast cancer (BRCA2-positive) 1.90E-04 21060860
17 622497 rs461521 Gene expression of ORC6L (probeID ILMN_1731070) in breast tumors 3.37E-04 22522925
17 622497 rs461521 Gene expression of CDK4 (probeID ILMN_1689001) in breast tumors 3.44E-04 22522925
17 622497 rs461521 Gene expression of SLC2A1 (probeID ILMN_1659027) in breast tumors 6.03E-04 22522925
17 76311991 rs4789580 Gene expression of PFDN5 (probeID ILMN_1755536) in breast tumors 2.70E-04 22522925
17 4137919 rs4790594 Gene expression of ZCCHC24 (probeID ILMN_1754660) in breast tumors 8.75E-06 22522925
17 4137919 rs4790594 Gene expression of TCF4 (probeID ILMN_1814194) in breast tumors 7.41E-04 22522925
17 4881434 rs4790719 Gene expression of SPAG7 (probeID ILMN_1684446) in breast tumors 8.81E-05 22522925
17 9734656 rs4791882 Breast cancer 2.00E-05 20872241
17 41916761 rs4793038 Gene expression of MPP3 (probeID ILMN_1724754) in breast tumors 5.62E-05 22522925
17 41231902 rs4793197 Gene expression of BRCA1 (probeID ILMN_2311089) in breast tumors 1.04E-21 22522925
17 41231902 rs4793197 Gene expression of BRCA1 (probeID ILMN_1738027) in breast tumors 8.53E-18 22522925
17 70303024 rs4793427 Breast cancer (hormonal receptor positive breast cancer) 5.90E-05 22951594
17 51909049 rs4794469 Breast cancer (BRCA2-positive) 1.06E-04 21060860
17 6341223 rs4796328 Breast size (bra cup size in women) 8.71E-05 22747683
17 6341272 rs4796494 Breast size (bra cup size in women) 9.53E-05 22747683
17 78354661 rs4889848 Gene expression of RNF213 (probeID ILMN_1749722) in breast tumors 1.79E-11 22522925
17 17568931 rs4925092 Gene expression of C20ORF24 (probeID ILMN_2387599) in breast tumors 3.01E-07 22522925
17 17568931 rs4925092 Gene expression of C20ORF24 (probeID ILMN_1679195) in breast tumors 3.37E-07 22522925
17 17568931 rs4925092 Gene expression of LOC731049 (probeID ILMN_1808591) in breast tumors 8.87E-07 22522925
17 17568931 rs4925092 Gene expression of SLC35A2 (probeID ILMN_1742731) in breast tumors 1.06E-05 22522925
17 17568931 rs4925092 Gene expression of AURKA (probeID ILMN_1680955) in breast tumors 1.61E-05 22522925
17 17568931 rs4925092 Gene expression of AURKA (probeID ILMN_2357438) in breast tumors 9.38E-05 22522925
17 17568931 rs4925092 Gene expression of FLJ21986 (probeID ILMN_1677038) in breast tumors 9.42E-04 22522925
17 446162 rs4968070 Gene expression of P2RY13 (probeID ILMN_1664094) in breast tumors 1.25E-04 22522925
17 54557543 rs5027751 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
17 43682098 rs55684829 Breast cancer (BRCA1 and BRCA2-carriers) 3.58E-11 23544013
17 43682098 rs55684829 Breast cancer (BRCA1-carriers) 1.07E-06 23544013
17 43682098 rs55684829 Breast cancer (BRCA2-carriers) 3.12E-06 23544013
17 44034575 rs55746658 Breast cancer (BRCA1 and BRCA2-carriers) 2.96E-11 23544013
17 44034575 rs55746658 Breast cancer (BRCA1-carriers) 6.68E-07 23544013
17 44034575 rs55746658 Breast cancer (BRCA2-carriers) 4.58E-06 23544013
17 15614822 rs55924512 Gene expression of HS.532698 (probeID ILMN_1862217) in breast tumors 8.85E-04 22522925
17 44034194 rs56061001 Breast cancer (BRCA1 and BRCA2-carriers) 1.38E-11 23544013
17 44034194 rs56061001 Breast cancer (BRCA1-carriers) 1.16E-07 23544013
17 44034194 rs56061001 Breast cancer (BRCA2-carriers) 1.89E-05 23544013
17 43682129 rs56118131 Breast cancer (BRCA1 and BRCA2-carriers) 5.75E-11 23544013
17 43682129 rs56118131 Breast cancer (BRCA1-carriers) 1.35E-06 23544013
17 43682129 rs56118131 Breast cancer (BRCA2-carriers) 4.15E-06 23544013
17 44034340 rs56201245 Breast cancer (BRCA1 and BRCA2-carriers) 3.52E-12 23544013
17 44034340 rs56201245 Breast cancer (BRCA1-carriers) 1.25E-07 23544013
17 44034340 rs56201245 Breast cancer (BRCA2-carriers) 3.18E-06 23544013
17 6349744 rs56264766 Breast size (bra cup size in women) 6.35E-05 22747683
17 44034209 rs56279806 Breast cancer (BRCA1 and BRCA2-carriers) 1.47E-11 23544013
17 44034209 rs56279806 Breast cancer (BRCA1-carriers) 1.20E-07 23544013
17 44034209 rs56279806 Breast cancer (BRCA2-carriers) 1.95E-05 23544013
17 44034486 rs56302057 Breast cancer (BRCA1 and BRCA2-carriers) 4.82E-12 23544013
17 44034486 rs56302057 Breast cancer (BRCA1-carriers) 1.08E-07 23544013
17 44034486 rs56302057 Breast cancer (BRCA2-carriers) 5.84E-06 23544013
17 31365894 rs57796901 Breast size (bra cup size in women) 8.81E-05 22747683
17 31335441 rs58265538 Breast size (bra cup size in women) 4.99E-05 22747683
17 700998 rs592294 Gene expression of WDR62 (probeID ILMN_1673073) in breast tumors 2.32E-04 22522925
17 43681414 rs62066074 Breast cancer (BRCA1 and BRCA2-carriers) 1.26E-11 23544013
17 43681414 rs62066074 Breast cancer (BRCA1-carriers) 3.35E-07 23544013
17 43681414 rs62066074 Breast cancer (BRCA2-carriers) 3.57E-06 23544013
17 14332986 rs6502358 Gene expression of PPM1M (probeID ILMN_1657810) in breast tumors 6.27E-04 22522925
17 14921926 rs6502412 Gene expression of PDCD5 (probeID ILMN_2228710) in breast tumors 2.24E-04 22522925
17 14921926 rs6502412 Gene expression of NME1 (probeID ILMN_1713875) in breast tumors 3.13E-04 22522925
17 53056471 rs6504950 Breast cancer 2.00E-13 23535729
17 53056471 rs6504950 Breast cancer 2.30E-13 23535729
17 53056471 rs6504950 Breast cancer 1.40E-08 19330027
17 35762517 rs712037 Gene expression of DUSP14 (probeID ILMN_1666546) in breast tumors 1.23E-25 22522925
17 12851378 rs7207068 Gene expression of NISCH (probeID ILMN_1735827) in breast tumors 9.06E-05 22522925
17 14904730 rs7209935 Gene expression of CYB5D2 (probeID ILMN_1696254) in breast tumors 3.05E-04 22522925
17 54453119 rs7210515 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
17 5191527 rs7212681 Gene expression of AK3 (probeID ILMN_1778173) in breast tumors 4.94E-04 22522925
17 15206034 rs7213079 Gene expression of FGD3 (probeID ILMN_1772686) in breast tumors 2.52E-04 22522925
17 6340515 rs7214517 Breast size (bra cup size in women) 9.61E-05 22747683
17 49467900 rs7216780 Gene expression of HDAC6 (probeID ILMN_1798546) in breast tumors 7.73E-04 22522925
17 17085409 rs7218781 Gene expression of HS.513971 (probeID ILMN_1836776) in breast tumors 3.73E-05 22522925
17 6340615 rs7218824 Breast size (bra cup size in women) 9.84E-05 22747683
17 59347872 rs7219201 Breast cancer (hormonal receptor positive breast cancer) 3.96E-05 22951594
17 7290695 rs7220814 Breast cancer 2.00E-05 23555315
17 38770286 rs7221109 Breast cancer 2.20E-04 23555315
17 11488831 rs7225382 Gene expression of GLOD4 (probeID ILMN_1738656) in breast tumors 8.67E-04 22522925
17 31835852 rs72823236 Breast size (bra cup size in women) 2.95E-05 22747683
17 31330722 rs73273930 Breast size (bra cup size in women) 7.86E-05 22747683
17 71232687 rs745143 Gene expression of C17ORF80 (probeID ILMN_1762071) in breast tumors 5.89E-07 22522925
17 3487285 rs7502141 Breast size (bra cup size in women) 1.86E-05 22747683
17 15133657 rs7538 Gene expression of HNMT (probeID ILMN_1790881) in breast tumors 3.49E-04 22522925
17 12000632 rs757594 Breast cancer 1.90E-06 20453838
17 3119673 rs769426 Gene expression of C20ORF24 (probeID ILMN_2283388) in breast tumors 3.38E-04 22522925
17 3958341 rs781845 Gene expression of TMEM119 (probeID ILMN_1738116) in breast tumors 2.18E-04 22522925
17 8273026 rs78738842 Breast cancer (Estrogen receptor negative breast cancer) 2.70E-07 23555315
17 4048081 rs8066337 Gene expression of FNBP1 (probeID ILMN_1797342) in breast tumors 9.91E-04 22522925
17 69379799 rs8066684 Gene expression of C6ORF208 (probeID ILMN_1738223) in breast tumors 3.70E-05 22522925
17 29708155 rs8067440 Gene expression of EVI2A (probeID ILMN_2369018) in breast tumors 3.72E-11 22522925
17 7172631 rs8067500 Gene expression of C17ORF81 (probeID ILMN_2341690) in breast tumors 8.65E-07 22522925
17 67837662 rs8068469 Breast cancer 6.10E-05 22923054
17 80608149 rs8068482 Gene expression of FOXK2 (probeID ILMN_2310685) in breast tumors 6.21E-14 22522925
17 74239621 rs8068689 Gene expression of ANLN (probeID ILMN_1739645) in breast tumors 5.48E-04 22522925
17 48593134 rs8068726 Gene expression of SPATA20 (probeID ILMN_1687247) in breast tumors 5.87E-10 22522925
17 29915708 rs8069530 Gene expression of TPX2 (probeID ILMN_1796949) in breast tumors 5.68E-07 22522925
17 29915708 rs8069530 Gene expression of KIF18A (probeID ILMN_2132161) in breast tumors 3.97E-05 22522925
17 29915708 rs8069530 Gene expression of CHEK1 (probeID ILMN_1664630) in breast tumors 5.43E-05 22522925
17 29915708 rs8069530 Gene expression of MELK (probeID ILMN_1731184) in breast tumors 1.66E-04 22522925
17 29915708 rs8069530 Gene expression of UBE2C (probeID ILMN_2301083) in breast tumors 2.43E-04 22522925
17 29915708 rs8069530 Gene expression of UBE2C (probeID ILMN_1714730) in breast tumors 3.86E-04 22522925
17 29915708 rs8069530 Gene expression of CENPE (probeID ILMN_1716279) in breast tumors 6.95E-04 22522925
17 29915708 rs8069530 Gene expression of CCNB2 (probeID ILMN_1801939) in breast tumors 9.27E-04 22522925
17 80874102 rs8070801 Gene expression of TBCD (probeID ILMN_1673376) in breast tumors 4.91E-19 22522925
17 40028568 rs8071234 Gene expression of NT5C3L (probeID ILMN_1750511) in breast tumors 7.14E-11 22522925
17 11490257 rs8072888 Gene expression of RFC4 (probeID ILMN_1724489) in breast tumors 5.26E-04 22522925
17 3175658 rs8075722 Breast cancer 5.26E-04 21424380
17 30763537 rs8078837 Breast cancer 4.20E-05 22923054
17 1919023 rs8080702 Gene expression of RTN4RL1 (probeID ILMN_1778683) in breast tumors 2.44E-07 22522925
17 57185807 rs8082544 Gene expression of TRIM37 (probeID ILMN_1711327) in breast tumors 3.20E-04 22522925
17 8092694 rs8531 Breast cancer 1.91E-04 pha002853
17 77461895 rs871739 Breast cancer (hormonal receptor positive breast cancer) 9.48E-05 22951594
17 48433081 rs886568 Gene expression of MRPL27 (probeID ILMN_1727558) in breast tumors 9.95E-07 22522925
17 19559468 rs962800 Gene expression of ALDH3A2 (probeID ILMN_2401641) in breast tumors 4.53E-14 22522925
17 3486192 rs9890572 Breast size (bra cup size in women) 2.14E-05 22747683
17 5862294 rs9890878 Gene expression of TNFSF12 (probeID ILMN_1683700) in breast tumors 5.68E-06 22522925
17 5862294 rs9890878 Gene expression of ITM2B (probeID ILMN_1751708) in breast tumors 9.02E-04 22522925
17 903819 rs9896110 Gene expression of TIMM22 (probeID ILMN_1706959) in breast tumors 2.62E-26 22522925
17 79191726 rs9896850 Gene expression of C17ORF56 (probeID ILMN_2056687) in breast tumors 2.30E-04 22522925
17 36479190 rs9897134 Gene expression of MRPL45 (probeID ILMN_1808301) in breast tumors 1.67E-24 22522925
17 30681354 rs9901737 Gene expression of C17ORF75 (probeID ILMN_1797155) in breast tumors 1.65E-59 22522925
17 30662832 rs9904964 Gene expression of C17ORF75 (probeID ILMN_1797155) in breast tumors 1.56E-10 22522925
17 79614481 rs9906358 Gene expression of TSPAN10 (probeID ILMN_1656194) in breast tumors 4.00E-81 22522925
17 8650958 rs9907783 Gene expression of TLR10 (probeID ILMN_1719905) in breast tumors 2.45E-04 22522925
17 8650958 rs9907783 Gene expression of ADAM28 (probeID ILMN_1664631) in breast tumors 4.44E-04 22522925
17 8650958 rs9907783 Gene expression of CX3CR1 (probeID ILMN_2088437) in breast tumors 9.16E-04 22522925
17 10729944 rs9908426 Breast size (bra cup size in women) 7.79E-05 22747683
17 12312385 rs9909973 Breast size (bra cup size in women) 9.82E-05 22747683
17 30784034 rs9910731 Gene expression of C17ORF75 (probeID ILMN_1797155) in breast tumors 2.56E-05 22522925
17 43681222 rs9912279 Breast cancer (BRCA1 and BRCA2-carriers) 3.19E-11 23544013
17 43681222 rs9912279 Breast cancer (BRCA1-carriers) 6.61E-07 23544013
17 43681222 rs9912279 Breast cancer (BRCA2-carriers) 4.46E-06 23544013
17 8038634 rs9912892 Gene expression of C17ORF68 (probeID ILMN_1772296) in breast tumors 4.84E-05 22522925
17 10730222 rs9913730 Breast size (bra cup size in women) 8.32E-05 22747683
17 4143290 rs9915670 Gene expression of ACSL5 (probeID ILMN_1705247) in breast tumors 6.40E-04 22522925
Chr Position SNPID Disease/Trait name pvalue PMID

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