The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
6 151932778 rs1023940 Breast size (bra cup size in women) 3.24E-05 22747683
6 107114361 rs1026619 Gene expression of QRSL1 (probeID ILMN_1733364) in breast tumors 2.83E-12 22522925
6 151933175 rs1038304 Breast size (bra cup size in women) 1.89E-05 22747683
6 151933175 rs1038304 Breast cancer risk (in BRCA1 mutation carriers) 4.50E-05 20852631
6 151933175 rs1038304 Breast cancer 1.03E-04 20852631
6 3023956 rs1040861 Gene expression of LOC401233 (probeID ILMN_1674285) in breast tumors 5.22E-145 22522925
6 128343842 rs10456973 Breast cancer (hormonal receptor positive breast cancer) 8.98E-05 22951594
6 151974422 rs10484919 Breast size (bra cup size in women) 1.49E-07 22747683
6 151974422 rs10484919 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 5.70E-06 24325915
6 151974422 rs10484919 Breast cancer (Estrogen receptor negative breast cancer) 4.29E-05 22976474
6 149845650 rs10485097 Breast cancer 3.30E-04 22228098
6 2890190 rs1052886 Gene expression of MGC39372 (probeID ILMN_1669122) in breast tumors 5.24E-13 22522925
6 86387888 rs1059307 Gene expression of SNHG5 (probeID ILMN_2200659) in breast tumors 5.05E-101 22522925
6 151943977 rs10872676 Breast size (bra cup size in women) 1.05E-05 22747683
6 151943977 rs10872676 Breast cancer 5.70E-05 19219042
6 73969722 rs10943084 Gene expression of KHDC1 (probeID ILMN_2163070) in breast tumors 2.93E-06 22522925
6 151924607 rs1110776 Breast size (bra cup size in women) 7.52E-07 22747683
6 50342857 rs111258617 Breast size (bra cup size in women) 6.19E-05 22747683
6 50227659 rs111482781 Breast size (bra cup size in women) 1.03E-05 22747683
6 107090614 rs11153019 Gene expression of QRSL1 (probeID ILMN_1733364) in breast tumors 1.48E-74 22522925
6 149426907 rs11155621 Breast cancer total mortality 1.60E-04 22232737
6 151927268 rs11155799 Breast cancer 7.20E-05 22228098
6 151945470 rs11155802 Breast size (bra cup size in women) 5.05E-07 22747683
6 151945669 rs11155803 Breast size (bra cup size in women) 2.18E-07 22747683
6 151946152 rs11155804 Breast size (bra cup size in women) 2.00E-08 22747683
6 151947326 rs11155805 Breast size (bra cup size in women) 2.65E-07 22747683
6 152077895 rs11155812 Breast cancer 7.09E-04 22228098
6 50375592 rs111975655 Breast size (bra cup size in women) 7.53E-05 22747683
6 50173109 rs112241181 Breast size (bra cup size in women) 1.66E-05 22747683
6 18139201 rs112339338 Breast cancer (Estrogen receptor positive breast cancer) 5.10E-05 23555315
6 50244067 rs112363222 Breast size (bra cup size in women) 2.64E-05 22747683
6 50215153 rs112385238 Breast size (bra cup size in women) 1.37E-05 22747683
6 1318878 rs11242675 Breast cancer 7.00E-09 23535729
6 1318878 rs11242675 Breast cancer 7.10E-09 23535729
6 1318878 rs11242675 Breast cancer (invasive breast cancer) 2.00E-08 23535729
6 1318878 rs11242675 Breast cancer (Estrogen receptor positive breast cancer) 1.60E-06 23535729
6 1318878 rs11242675 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-03 23535733
6 50226893 rs112462327 Breast size (bra cup size in women) 9.54E-06 22747683
6 149842694 rs1125107 Breast cancer 3.32E-04 22228098
6 50300035 rs112912553 Breast size (bra cup size in women) 8.30E-05 22747683
6 50368613 rs112952131 Breast size (bra cup size in women) 9.62E-05 22747683
6 167385623 rs1130033 Gene expression of RNASET2 (probeID ILMN_1671565) in breast tumors 1.36E-05 22522925
6 151649651 rs113035196 Breast cancer 6.84E-04 22228098
6 50238492 rs113177152 Breast size (bra cup size in women) 2.55E-05 22747683
6 50231994 rs113473182 Breast size (bra cup size in women) 2.67E-05 22747683
6 50223639 rs113530628 Breast size (bra cup size in women) 9.80E-06 22747683
6 50162158 rs113916623 Breast size (bra cup size in women) 8.86E-06 22747683
6 50309143 rs113930460 Breast size (bra cup size in women) 8.69E-05 22747683
6 50210861 rs114638366 Breast size (bra cup size in women) 1.37E-05 22747683
6 50346278 rs115796796 Breast size (bra cup size in women) 6.58E-05 22747683
6 38854645 rs116401640 Breast cancer 6.90E-04 23555315
6 134308216 rs117173630 Breast cancer 9.40E-05 23555315
6 125083211 rs11756456 Gene expression of POU4F1 (probeID ILMN_1738691) in breast tumors 1.93E-05 22522925
6 25359545 rs11759658 Breast cancer 3.22E-05 20872241
6 151875122 rs11759804 Breast cancer 3.02E-04 22228098
6 152087345 rs118028050 Breast cancer 7.50E-05 22228098
6 99793615 rs11963108 Gene expression of HS.486010 (probeID ILMN_1868572) in breast tumors 1.15E-09 22522925
6 99793615 rs11963108 Gene expression of C6ORF168 (probeID ILMN_1715096) in breast tumors 2.53E-05 22522925
6 45526942 rs1200426 Gene expression of RUNX2 (probeID ILMN_1716651) in breast tumors 4.06E-29 22522925
6 20156174 rs1202199 Breast cancer 7.70E-04 23555315
6 151922654 rs12055593 Breast cancer 4.70E-06 22228098
6 125422932 rs12055611 Breast size (bra cup size in women) 3.88E-05 22747683
6 32074804 rs12153855 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 2.00E-04 21245432
6 151957570 rs12173562 Breast size (bra cup size in women) 3.48E-10 22747683
6 151957714 rs12173570 Breast size (bra cup size in women) 5.58E-11 22747683
6 151957714 rs12173570 Breast size 6.00E-11 22747683
6 69224305 rs12190998 Breast size (bra cup size in women) 7.04E-05 22747683
6 69289452 rs12197932 Breast size (bra cup size in women) 6.43E-05 22747683
6 69204662 rs12200151 Breast size (bra cup size in women) 5.43E-05 22747683
6 396321 rs12203592 Breast cancer 2.70E-06 20453838
6 139837171 rs12205386 Gene expression of HS.550236 (probeID ILMN_1904261) in breast tumors 2.83E-04 22522925
6 69233976 rs12206658 Breast size (bra cup size in women) 7.76E-05 22747683
6 69204581 rs12207038 Breast size (bra cup size in women) 5.51E-05 22747683
6 66168229 rs12208109 Breast cancer early age of onset 2.07E-05 18463975
6 151928164 rs12210307 Breast size (bra cup size in women) 9.02E-06 22747683
6 69233744 rs12211257 Breast size (bra cup size in women) 7.74E-05 22747683
6 152141622 rs12523770 Breast cancer 2.66E-04 22228098
6 152141657 rs12523805 Breast cancer 7.02E-04 22228098
6 75611839 rs12523819 Breast cancer early age of onset (diagnosed before age 40) 2.30E-05 23319801
6 149821322 rs12524946 Breast cancer 2.35E-04 22228098
6 152040291 rs12525163 Breast cancer 8.70E-04 23555315
6 152151196 rs12527007 Breast cancer 4.53E-04 22228098
6 111355785 rs12527783 Gene expression of BXDC1 (probeID ILMN_1664167) in breast tumors 3.78E-09 22522925
6 151947631 rs12528841 Breast size (bra cup size in women) 1.88E-08 22747683
6 109946561 rs12529505 Gene expression of SMPD2 (probeID ILMN_1672176) in breast tumors 1.90E-05 22522925
6 30882513 rs1264303 Breast cancer 7.50E-04 23555315
6 30875899 rs1264309 Breast cancer 7.20E-04 23555315
6 4469641 rs1265273 Breast cancer risk (in BRCA1 mutation carriers) 6.18E-05 20852631
6 4469641 rs1265273 Breast cancer 2.30E-04 20852631
6 152131121 rs12660738 Breast cancer 3.56E-04 22228098
6 151918856 rs12662670 Breast size (bra cup size in women) 6.16E-07 22747683
6 151929925 rs12663501 Breast size (bra cup size in women) 7.16E-07 22747683
6 149844785 rs12663698 Breast cancer 2.26E-04 22228098
6 151930249 rs12663827 Breast size (bra cup size in women) 5.99E-07 22747683
6 149829761 rs12665533 Breast cancer 3.56E-04 22228098
6 151946629 rs12665607 Breast size (bra cup size in women) 1.34E-09 22747683
6 152017958 rs1293935 Breast cancer 5.62E-04 22228098
6 151970639 rs1293960 Breast size (bra cup size in women) 1.93E-05 22747683
6 151969912 rs1293961 Breast size (bra cup size in women) 2.79E-08 22747683
6 151967175 rs1293964 Breast size (bra cup size in women) 2.57E-08 22747683
6 134873987 rs13199020 Breast cancer (hormonal receptor positive breast cancer) 1.92E-05 22951594
6 151873896 rs13213582 Breast cancer 6.80E-04 22228098
6 7690468 rs1322243 Gene expression of HS.150105 (probeID ILMN_1917145) in breast tumors 8.67E-04 22522925
6 50081364 rs1324524 Breast size (bra cup size in women) 5.71E-05 22747683
6 50081669 rs1324525 Breast size (bra cup size in women) 3.13E-05 22747683
6 50082003 rs1324526 Breast size (bra cup size in women) 3.00E-05 22747683
6 6568762 rs1330803 Gene expression of LY86 (probeID ILMN_1807825) in breast tumors 5.75E-04 22522925
6 8483819 rs1335639 Gene expression of HS.311049 (probeID ILMN_1821104) in breast tumors 3.90E-07 22522925
6 152137404 rs13362642 Breast cancer 6.64E-04 22228098
6 151890603 rs1340873 Breast cancer 2.24E-04 22228098
6 82304235 rs13437553 Breast cancer (Estrogen receptor negative breast cancer) 8.14E-06 22976474
6 67596834 rs138194113 Breast size (bra cup size in women) 6.55E-06 22747683
6 28540989 rs138676911 Breast cancer 2.10E-05 23555315
6 44274257 rs139372744 Breast cancer (Estrogen receptor positive breast cancer) 4.20E-06 23555315
6 152534783 rs139466191 Breast cancer 2.50E-04 23555315
6 50139680 rs140078388 Breast size (bra cup size in women) 2.80E-05 22747683
6 125416175 rs140106358 Breast size (bra cup size in women) 3.65E-05 22747683
6 30162038 rs140461943 Breast size (bra cup size in women) 2.83E-05 22747683
6 32015775 rs140530599 Breast cancer 1.00E-04 23555315
6 6266854 rs140712764 Breast cancer 6.80E-05 23555315
6 36867372 rs140986907 Breast cancer 5.20E-04 23555315
6 151835532 rs143390228 Breast cancer 2.10E-04 22228098
6 46996760 rs143669522 Breast cancer (Estrogen receptor negative breast cancer) 3.80E-05 23555315
6 30160461 rs143912593 Breast size (bra cup size in women) 3.08E-05 22747683
6 151922654 rs144381984 Breast cancer 4.70E-06 22228098
6 42950883 rs144518702 Breast size (bra cup size in women) 3.57E-05 22747683
6 32948385 rs144861747 Breast cancer (Estrogen receptor positive breast cancer) 1.00E-04 23555315
6 32948385 rs144861747 Breast cancer 1.20E-04 23555315
6 151999415 rs146376469 Breast cancer 1.80E-05 22228098
6 126329589 rs146575767 Breast cancer 1.70E-04 23555315
6 144263042 rs147054773 Breast cancer 3.10E-04 23555315
6 149558895 rs1474637 Breast cancer 2.72E-04 22228098
6 149813940 rs1474640 Breast cancer 2.02E-04 22228098
6 151823813 rs1482061 Breast cancer 2.48E-04 22228098
6 31918154 rs149101394 Breast cancer 3.50E-06 23555315
6 31918154 rs149101394 Breast cancer (Estrogen receptor positive breast cancer) 1.00E-04 23555315
6 150868443 rs1492574 Breast cancer (Estrogen receptor negative breast cancer) 6.48E-05 22976474
6 25405164 rs150634035 Breast size (bra cup size in women) 6.46E-05 22747683
6 75994198 rs151068918 Breast cancer (Estrogen receptor negative breast cancer) 2.10E-06 23555315
6 2833739 rs15286 Gene expression of SERPINB1 (probeID ILMN_1679133) in breast tumors 1.47E-21 22522925
6 152428704 rs1543403 Breast size (bra cup size in women) 7.13E-05 22747683
6 152428838 rs1543404 Breast size (bra cup size in women) 5.69E-05 22747683
6 29789171 rs1610677 Gene expression of LOC642049 (probeID ILMN_1737172) in breast tumors 3.81E-13 22522925
6 29916368 rs1632882 Gene expression of HLA-A (probeID ILMN_1671054) in breast tumors 4.83E-20 22522925
6 29917146 rs1655904 Gene expression of HLA-G (probeID ILMN_1656670) in breast tumors 1.39E-04 22522925
6 105410048 rs167539 Puberty onset (breast development) 4.30E-07 24770850
6 19443935 rs16882214 Breast cancer (familial breast cancer) 1.53E-06 23354978
6 19443935 rs16882214 Breast cancer 2.00E-06 23354978
6 29821050 rs16896119 Gene expression of LOC554223 (probeID ILMN_1781236) in breast tumors 5.46E-15 22522925
6 151854094 rs17054385 Breast cancer 7.17E-04 22228098
6 151925783 rs17081488 Breast size (bra cup size in women) 7.33E-07 22747683
6 151958815 rs17081533 Breast size (bra cup size in women) 5.00E-10 22747683
6 151980730 rs17081551 Breast cancer 7.50E-06 22228098
6 154412236 rs17174822 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-06 23555315
6 151990235 rs1738386 Breast size (bra cup size in women) 1.24E-05 22747683
6 32607356 rs17426565 Gene expression of LIMS1 (probeID ILMN_1675387) in breast tumors 1.21E-09 22522925
6 82193109 rs17530068 Breast cancer 1.10E-09 22976474
6 82193109 rs17530068 Breast cancer 8.00E-09 23535729
6 82193109 rs17530068 Breast cancer 8.20E-09 23535729
6 82193109 rs17530068 Breast cancer 3.00E-07 22976474
6 82193109 rs17530068 Breast cancer 3.00E-06 23535733
6 82193109 rs17530068 Breast cancer (Estrogen receptor negative breast cancer) 3.30E-06 23535733
6 82193109 rs17530068 Breast cancer (Estrogen receptor negative breast cancer) 3.52E-06 22976474
6 82193109 rs17530068 Breast cancer (Estrogen receptor positive breast cancer) 1.50E-05 22976474
6 151243840 rs175854 Breast cancer 1.32E-04 22228098
6 56823425 rs17685277 Gene expression of C6ORF65 (probeID ILMN_1706969) in breast tumors 1.13E-08 22522925
6 149815782 rs17732745 Breast cancer 2.18E-04 22228098
6 46684222 rs1805017 Gene expression of SLC25A27 (probeID ILMN_1698726) in breast tumors 4.11E-04 22522925
6 151860110 rs1856859 Breast cancer 6.46E-04 22228098
6 151898506 rs1871859 Breast cancer 2.40E-04 22228098
6 24491475 rs1883415 Gene expression of ALDH5A1 (probeID ILMN_2372398) in breast tumors 2.84E-05 22522925
6 119399385 rs192266016 Breast cancer 6.20E-05 23555315
6 119399385 rs192266016 Breast cancer (Estrogen receptor negative breast cancer) 8.90E-05 23555315
6 26377573 rs1978 Gene expression of BTN3A2 (probeID ILMN_1700067) in breast tumors 1.57E-05 22522925
6 152068364 rs1999805 Breast cancer 4.10E-04 23555315
6 123673686 rs200243235 Breast cancer (Estrogen receptor negative breast cancer) 2.60E-05 23555315
6 27293272 rs200789956 Breast cancer (Estrogen receptor negative breast cancer) 1.70E-06 23555315
6 27819353 rs200988 Gene expression of ZNF323 (probeID ILMN_2377991) in breast tumors 1.35E-04 22522925
6 42568248 rs2025249 Gene expression of PRPH2 (probeID ILMN_1807610) in breast tumors 1.00E-16 22522925
6 50082530 rs2031363 Breast size (bra cup size in women) 2.07E-05 22747683
6 50082442 rs2031364 Breast size (bra cup size in women) 2.14E-05 22747683
6 28077374 rs203884 Gene expression of ZNF323 (probeID ILMN_1655748) in breast tumors 2.35E-10 22522925
6 13722523 rs204247 Breast cancer 8.00E-09 23535729
6 13722523 rs204247 Breast cancer 8.30E-09 23535729
6 13722523 rs204247 Breast cancer (Estrogen receptor positive breast cancer) 9.00E-08 23535729
6 13722523 rs204247 Breast cancer (invasive breast cancer) 9.00E-07 23535729
6 151948366 rs2046210 Breast cancer 3.60E-39 22383897
6 151948366 rs2046210 Breast cancer 2.00E-19 23535729
6 151948366 rs2046210 Breast cancer (Estrogen receptor negative breast cancer) 4.90E-16 23535733
6 151948366 rs2046210 Breast cancer 5.00E-16 23535733
6 151948366 rs2046210 Breast cancer 2.00E-15 19219042
6 151948366 rs2046210 Breast cancer (Estrogen receptor negative breast cancer) 4.20E-12 19219042
6 151948366 rs2046210 Breast cancer (Estrogen receptor positive breast cancer) 7.10E-10 19219042
6 151948366 rs2046210 Breast cancer risk (Postmenopausal women) 1.10E-09 19219042
6 151948366 rs2046210 Breast Cancer in BRCA1 mutation carriers 5.00E-09 23544013
6 151948366 rs2046210 Breast size (bra cup size in women) 1.33E-08 22747683
6 151948366 rs2046210 Breast cancer (BRCA1-carriers) 2.80E-08 23544013
6 151948366 rs2046210 Breast cancer 5.80E-08 22452962
6 151948366 rs2046210 Breast cancer risk (Premenopausal women) 1.60E-07 19219042
6 151948366 rs2046210 Breast cancer (Estrogen receptor negative breast cancer) 5.00E-07 22452962
6 151948366 rs2046210 Breast cancer (Progesterone receptor negative breast cancer) 2.90E-06 22452962
6 151948366 rs2046210 Breast cancer (Progesterone receptor positive breast cancer) 5.10E-06 22452962
6 151948366 rs2046210 Breast cancer (Estrogen receptor positive breast cancer) 1.20E-05 22452962
6 151948366 rs2046210 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 5.26E-05 24325915
6 35090279 rs2057537 Breast cancer (BRCA2-positive) 2.19E-04 21060860
6 93605453 rs2066012 Breast cancer early age of onset 2.43E-04 18463975
6 32782582 rs2071474 Gene expression of TAP2 (probeID ILMN_1759250) in breast tumors 3.52E-07 22522925
6 105383978 rs2095812 Puberty onset (breast development) 2.60E-07 24770850
6 151655394 rs2101240 Breast cancer 4.57E-04 22228098
6 149815393 rs2105200 Breast cancer 8.28E-04 22228098
6 151661117 rs2128947 Breast cancer 1.80E-04 22228098
6 151661141 rs2128948 Breast cancer 1.75E-04 22228098
6 24094140 rs2176933 Breast cancer 2.09E-04 pha002853
6 42168542 rs2180172 Gene expression of GUCA1B (probeID ILMN_1689264) in breast tumors 8.77E-04 22522925
6 127600630 rs2180341 Breast cancer 2.90E-08 18326623
6 127600630 rs2180341 Breast cancer 3.00E-08 18326623
6 127600630 rs2180341 Breast cancer (familial breast cancer) 6.86E-04 23354978
6 118546256 rs2184365 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
6 50081061 rs2224886 Breast size (bra cup size in women) 3.52E-05 22747683
6 34512195 rs2233637 Breast cancer 1.10E-04 23555315
6 31265262 rs2246954 Gene expression of HLA-C (probeID ILMN_1721113) in breast tumors 6.12E-68 22522925
6 30892377 rs2252760 Breast cancer 7.50E-04 23555315
6 42932715 rs2274517 Gene expression of PEX6 (probeID ILMN_1683279) in breast tumors 1.30E-127 22522925
6 149815427 rs2341550 Breast cancer 2.18E-04 22228098
6 149814762 rs2341551 Breast cancer 8.28E-04 22228098
6 149810195 rs2341768 Breast cancer 1.83E-04 22228098
6 32388308 rs2395167 Breast cancer early age of onset 4.04E-04 18463975
6 88061039 rs242265 Gene expression of C6ORF162 (probeID ILMN_1693323) in breast tumors 3.66E-07 22522925
6 88061039 rs242265 Gene expression of C6ORF162 (probeID ILMN_2413141) in breast tumors 6.41E-07 22522925
6 110792782 rs2428189 Gene expression of SLC22A16 (probeID ILMN_1763609) in breast tumors 5.21E-04 22522925
6 143729447 rs2496585 Breast cancer 1.21E-04 pha002853
6 29700079 rs2523399 Gene expression of HLA-A29.1 (probeID ILMN_2165753) in breast tumors 7.29E-106 22522925
6 30897774 rs2532929 Breast cancer 8.10E-04 23555315
6 30271144 rs261947 Gene expression of HCG18 (probeID ILMN_1683995) in breast tumors 1.52E-05 22522925
6 151654269 rs2626356 Breast cancer 4.22E-04 22228098
6 31893944 rs2734335 Breast cancer 4.50E-04 23555315
6 29755451 rs2743941 Breast cancer(er negative) 6.80E-05 23555315
6 152437016 rs2747652 Breast size (bra cup size in women) 6.07E-05 22747683
6 152437016 rs2747652 Breast cancer (Estrogen receptor negative breast cancer) 9.55E-05 22976474
6 39239122 rs2758862 Breast cancer 1.10E-04 22452962
6 35751895 rs2766582 Gene expression of LOC340204 (probeID ILMN_1789600) in breast tumors 4.76E-08 22522925
6 151654653 rs2786746 Breast cancer 3.51E-04 22228098
6 46144252 rs2799359 Breast cancer (BRCA2-positive) 1.51E-05 21060860
6 31882024 rs2844452 Breast cancer 4.10E-04 23555315
6 30838688 rs2844654 Breast cancer 8.40E-04 23555315
6 152155126 rs28457010 Breast cancer 4.56E-04 22228098
6 151876387 rs28517362 Breast cancer 3.39E-04 22228098
6 149881414 rs28580659 Breast cancer 2.34E-04 22228098
6 149814658 rs2880075 Breast cancer 8.25E-04 22228098
6 152009638 rs2941740 Breast cancer 4.81E-04 22228098
6 152009638 rs2941740 Breast cancer 8.50E-04 23555315
6 152008982 rs2941741 Breast cancer 6.81E-04 22228098
6 152012988 rs2941742 Breast cancer 8.12E-04 22228098
6 152061474 rs2982550 Breast cancer 6.23E-04 22228098
6 152061210 rs2982551 Breast cancer 5.65E-04 22228098
6 152013748 rs2982570 Breast cancer 8.69E-04 22228098
6 152012739 rs2982571 Breast cancer 8.08E-04 22228098
6 152010561 rs2982572 Breast cancer 4.76E-04 22228098
6 152010534 rs2982573 Breast cancer 4.79E-04 22228098
6 139759442 rs3010313 Breast size (bra cup size in women) 7.26E-05 22747683
6 152061579 rs3020301 Breast cancer 5.69E-04 22228098
6 152008780 rs3020331 Breast cancer 5.57E-04 22228098
6 152012956 rs3020334 Breast cancer 8.08E-04 22228098
6 152013223 rs3020335 Breast cancer 8.06E-04 22228098
6 152013760 rs3020336 Breast cancer 8.32E-04 22228098
6 31894626 rs3020644 Breast cancer 1.70E-04 23555315
6 31474688 rs3093953 Gene expression of HS.158691 (probeID ILMN_1893395) in breast tumors 2.53E-05 22522925
6 31383848 rs3094584 Gene expression of MICA (probeID ILMN_1797929) in breast tumors 1.67E-06 22522925
6 31107087 rs3094663 Breast cancer survival 1.10E-05 20332263
6 33055780 rs3128963 Gene expression of HLA-DPB1 (probeID ILMN_1749070) in breast tumors 9.53E-10 22522925
6 32404377 rs3129868 Gene expression of HLA-DRB5 (probeID ILMN_1697499) in breast tumors 2.79E-138 22522925
6 31058340 rs3130544 Breast cancer 1.62E-04 pha002853
6 30758466 rs3131043 Breast cancer 1.76E-04 pha002853
6 105392745 rs314263 Puberty onset (breast development) 3.10E-07 24770850
6 105417978 rs314268 Puberty onset (breast development) 9.60E-07 24770850
6 105461882 rs314273 Puberty onset (breast development) 6.80E-07 24770850
6 105407999 rs314276 Puberty onset (breast development) 3.70E-07 24770850
6 147764267 rs325105 Breast cancer 1.95E-04 pha002853
6 151917660 rs34430497 Breast size (bra cup size in women) 2.64E-06 22747683
6 151876661 rs35025342 Breast cancer 3.38E-04 22228098
6 151876486 rs35106185 Breast cancer 3.38E-04 22228098
6 151876044 rs35183457 Breast cancer 3.36E-04 22228098
6 151848066 rs35324372 Breast cancer 8.11E-04 22228098
6 151876494 rs35564624 Breast cancer 3.38E-04 22228098
6 151677358 rs3734794 Breast cancer 4.20E-04 22228098
6 151674593 rs3734795 Breast cancer 3.59E-04 22228098
6 151672812 rs3734797 Breast cancer 3.76E-04 22228098
6 151939181 rs3734804 Breast size (bra cup size in women) 1.00E-05 22747683
6 151939350 rs3734805 Breast cancer (BRCA1-carriers) 5.00E-09 23544013
6 151939350 rs3734805 Breast size (bra cup size in women) 1.05E-08 22747683
6 151939350 rs3734805 Breast cancer 1.00E-07 21263130
6 151939350 rs3734805 Breast cancer 1.35E-07 21263130
6 151939350 rs3734805 Breast cancer (Estrogen receptor negative breast cancer) 1.02E-05 22976474
6 151939350 rs3734805 Breast cancer (Estrogen receptor negative breast cancer) 4.80E-05 22452962
6 151939350 rs3734805 Breast cancer 1.80E-04 22452962
6 151939350 rs3734805 Breast cancer (Progesterone receptor negative breast cancer) 6.00E-04 22452962
6 151941461 rs3734806 Breast size (bra cup size in women) 1.62E-06 22747683
6 151914113 rs3757318 Breast cancer 2.00E-21 23535729
6 151914113 rs3757318 Breast cancer 2.20E-21 23535729
6 151914113 rs3757318 Breast cancer (Estrogen receptor negative breast cancer) 2.50E-11 23535733
6 151914113 rs3757318 Breast cancer 2.90E-06 20453838
6 151914113 rs3757318 Breast cancer 3.00E-06 20453838
6 151914113 rs3757318 Breast size (bra cup size in women) 6.67E-06 22747683
6 151914113 rs3757318 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 9.00E-06 24325915
6 151914113 rs3757318 Breast cancer (Estrogen receptor negative breast cancer) 4.12E-04 22976474
6 151942194 rs3757322 Breast size (bra cup size in women) 1.27E-06 22747683
6 152133187 rs3778609 Breast cancer 1.58E-04 22228098
6 152133351 rs3778610 Breast cancer 5.14E-04 22228098
6 89869613 rs378141 Gene expression of CYFIP2 (probeID ILMN_2354478) in breast tumors 8.59E-05 22522925
6 25099340 rs3792971 Gene expression of CMAH (probeID ILMN_1704084) in breast tumors 2.69E-05 22522925
6 26404374 rs3799378 Gene expression of BTN3A2 (probeID ILMN_1676528) in breast tumors 9.68E-35 22522925
6 149866780 rs3813675 Breast cancer 2.71E-04 22228098
6 42934620 rs3818554 Gene expression of PEX6 (probeID ILMN_1683279) in breast tumors 2.04E-09 22522925
6 87124569 rs3857481 Breast cancer 5.00E-07 17529967
6 30890483 rs386556492 Breast cancer 7.20E-04 23555315
6 32796793 rs386591505 Breast cancer (Estrogen receptor positive breast cancer) 2.90E-04 23555315
6 105397418 rs395962 Puberty onset (breast development) 3.00E-07 24770850
6 36297893 rs41272160 Breast cancer (Estrogen receptor positive breast cancer) 7.10E-05 23555315
6 151671182 rs41289369 Breast cancer 2.17E-04 22228098
6 151678063 rs41289379 Breast cancer 4.21E-04 22228098
6 119297143 rs41292558 Breast cancer 1.20E-04 23555315
6 3006807 rs4149360 Gene expression of NQO2 (probeID ILMN_1712918) in breast tumors 3.72E-42 22522925
6 31920873 rs4151664 Breast cancer 8.40E-04 23555315
6 11424578 rs4285312 Gene expression of NEDD9 (probeID ILMN_2261076) in breast tumors 1.84E-04 22522925
6 151923982 rs4304175 Breast cancer 2.60E-05 22228098
6 151926707 rs4324787 Breast size (bra cup size in women) 3.49E-06 22747683
6 151893073 rs4391273 Breast cancer 7.72E-04 22228098
6 31927342 rs440454 Gene expression of CYP21A2 (probeID ILMN_1773082) in breast tumors 7.64E-09 22522925
6 151923870 rs4432988 Breast size (bra cup size in women) 1.04E-05 22747683
6 151918023 rs4524618 Breast cancer 3.70E-06 22228098
6 151943639 rs4591859 Breast cancer 8.60E-09 22383897
6 151943639 rs4591859 Breast size (bra cup size in women) 1.17E-05 22747683
6 152080665 rs4644077 Breast cancer 8.49E-04 22228098
6 71755474 rs4706478 Breast cancer (Estrogen receptor negative breast cancer) 3.76E-05 22976474
6 160204127 rs4709368 Gene expression of TCP1 (probeID ILMN_2313434) in breast tumors 7.35E-38 22522925
6 34138089 rs4711381 Breast size (bra cup size in women) 6.44E-05 22747683
6 44064064 rs4714739 Gene expression of MRPL14 (probeID ILMN_2072603) in breast tumors 6.98E-05 22522925
6 149878005 rs4869701 Breast cancer 2.85E-04 22228098
6 151822015 rs4869732 Breast cancer 2.16E-04 22228098
6 149868764 rs4869797 Breast cancer 2.73E-04 22228098
6 151682362 rs4870013 Breast cancer 5.15E-04 22228098
6 151849927 rs4870032 Breast cancer 7.17E-04 22228098
6 151872090 rs4870040 Breast cancer 6.27E-04 22228098
6 151872324 rs4870041 Breast cancer 6.27E-04 22228098
6 151888053 rs4870042 Breast cancer 3.42E-04 22228098
6 149558624 rs4897094 Breast cancer 5.23E-04 22228098
6 149813362 rs4897128 Breast cancer 2.10E-04 22228098
6 149813527 rs4897129 Breast cancer 2.24E-04 22228098
6 149813528 rs4897130 Breast cancer 2.38E-04 22228098
6 149816622 rs4897131 Breast cancer 8.25E-04 22228098
6 149816815 rs4897132 Breast cancer 8.25E-04 22228098
6 149816989 rs4897133 Breast cancer 2.31E-04 22228098
6 149840177 rs4897137 Breast cancer 3.29E-04 22228098
6 149840543 rs4897138 Breast cancer 3.29E-04 22228098
6 151663521 rs55643577 Breast cancer 1.15E-04 22228098
6 50257653 rs55679248 Breast size (bra cup size in women) 1.96E-05 22747683
6 151660689 rs55697930 Breast cancer 9.21E-04 22228098
6 151660544 rs55702615 Breast cancer 1.09E-04 22228098
6 50355537 rs56057566 Breast size (bra cup size in women) 4.45E-05 22747683
6 50298070 rs56331527 Breast size (bra cup size in women) 5.34E-05 22747683
6 29896659 rs56349017 Gene expression of HLA-A29.1 (probeID ILMN_2165753) in breast tumors 1.41E-23 22522925
6 151975773 rs56508188 Breast size (bra cup size in women) 1.32E-05 22747683
6 32448129 rs56578397 Gene expression of HLA-DRB6 (probeID ILMN_2066060) in breast tumors 5.36E-146 22522925
6 109506461 rs566164 Breast cancer (familial breast cancer) 6.67E-06 23354978
6 152007611 rs57040689 Breast size (bra cup size in women) 1.55E-05 22747683
6 151838856 rs57521493 Breast cancer 4.01E-04 22228098
6 69206678 rs57858922 Breast size (bra cup size in women) 5.85E-05 22747683
6 50360821 rs58136306 Breast size (bra cup size in women) 4.82E-05 22747683
6 151953180 rs58343273 Breast size (bra cup size in women) 3.36E-10 22747683
6 69201949 rs58370333 Breast size (bra cup size in women) 6.40E-05 22747683
6 151982681 rs58374672 Breast cancer 9.70E-06 22228098
6 151916064 rs58893329 Breast size (bra cup size in women) 8.05E-07 22747683
6 50349685 rs58979466 Breast size (bra cup size in women) 4.71E-05 22747683
6 151676725 rs59387598 Breast cancer 4.18E-04 22228098
6 151978964 rs59623026 Breast cancer 6.70E-06 22228098
6 151981844 rs60220348 Breast cancer 7.40E-06 22228098
6 149811693 rs60404985 Breast cancer 7.11E-04 22228098
6 151955985 rs60705924 Breast size (bra cup size in women) 3.56E-08 22747683
6 151955914 rs60954078 Breast size (bra cup size in women) 2.54E-10 22747683
6 151990488 rs61176871 Breast cancer 2.60E-05 22228098
6 27279805 rs61736098 Breast cancer 2.00E-04 23555315
6 27293114 rs61743950 Breast cancer 9.20E-05 23555315
6 27293107 rs61746402 Breast cancer 9.20E-05 23555315
6 69212766 rs62416471 Breast size (bra cup size in women) 6.60E-05 22747683
6 69212806 rs62416472 Breast size (bra cup size in women) 6.59E-05 22747683
6 69247140 rs62416494 Breast size (bra cup size in women) 5.59E-05 22747683
6 149878587 rs62439776 Breast cancer 2.86E-04 22228098
6 149886122 rs62439778 Breast cancer 1.85E-04 22228098
6 149815469 rs62442787 Breast cancer 8.28E-04 22228098
6 149815563 rs62442788 Breast cancer 2.18E-04 22228098
6 149823896 rs62442789 Breast cancer 6.78E-04 22228098
6 149823899 rs62442790 Breast cancer 2.24E-04 22228098
6 149831810 rs62442792 Breast cancer 3.59E-04 22228098
6 149831874 rs62442793 Breast cancer 3.59E-04 22228098
6 149846962 rs62442795 Breast cancer 3.29E-04 22228098
6 149865296 rs62442798 Breast cancer 2.73E-04 22228098
6 69109147 rs62453665 Breast size (bra cup size in women) 3.32E-05 22747683
6 64564256 rs630445 Breast size (bra cup size in women) 7.62E-05 22747683
6 75835305 rs6453815 Breast cancer (hormonal receptor positive breast cancer) 6.87E-05 22951594
6 82343415 rs6454237 Breast cancer (Estrogen receptor negative breast cancer) 4.76E-06 22976474
6 37661041 rs6458012 Gene expression of MDGA1 (probeID ILMN_1720595) in breast tumors 1.76E-05 22522925
6 41289590 rs6458215 Gene expression of HOXC10 (probeID ILMN_1725899) in breast tumors 8.32E-04 22522925
6 50087752 rs6458721 Breast size (bra cup size in women) 1.53E-05 22747683
6 50229428 rs6458730 Breast size (bra cup size in women) 1.81E-05 22747683
6 151929942 rs6557158 Breast cancer 2.60E-05 22228098
6 151949582 rs6557160 Breast size (bra cup size in women) 2.59E-07 22747683
6 151950235 rs6557161 Breast size (bra cup size in women) 9.23E-09 22747683
6 127606588 rs6569479 Breast cancer 1.20E-07 18326623
6 127621748 rs6569480 Breast cancer 6.10E-08 18326623
6 146886556 rs6570768 Breast cancer total mortality 4.50E-05 22232737
6 146886556 rs6570768 Breast cancer recurrence 6.10E-04 22232737
6 149562839 rs6570956 Breast cancer 7.80E-05 22228098
6 149820973 rs6570968 Breast cancer 7.17E-04 22228098
6 151876216 rs66775662 Breast cancer 3.45E-04 22228098
6 151876730 rs67445790 Breast cancer 3.38E-04 22228098
6 151926133 rs6899533 Breast size (bra cup size in women) 9.26E-06 22747683
6 151954127 rs6900157 Breast size (bra cup size in women) 9.81E-09 22747683
6 151954127 rs6900157 Breast cancer 1.80E-05 20453838
6 151947736 rs6901351 Breast size (bra cup size in women) 2.35E-09 22747683
6 139019029 rs6901919 Gene expression of FLJ46906 (probeID ILMN_1773553) in breast tumors 7.24E-35 22522925
6 32731960 rs6902723 Gene expression of HLA-DQB2 (probeID ILMN_1741648) in breast tumors 2.29E-71 22522925
6 32732210 rs6903130 Gene expression of HLA-DQB2 (probeID ILMN_1741648) in breast tumors 1.91E-16 22522925
6 151881805 rs6904133 Breast cancer 4.50E-04 22228098
6 151939873 rs6906130 Breast size (bra cup size in women) 4.12E-06 22747683
6 50082140 rs6908223 Breast size (bra cup size in women) 2.32E-05 22747683
6 149810650 rs6911016 Breast cancer 7.21E-04 22228098
6 151455122 rs6911282 Breast cancer 1.80E-04 21908515
6 151958612 rs6912323 Breast size (bra cup size in women) 5.98E-10 22747683
6 151949806 rs6913578 Breast size (bra cup size in women) 2.36E-07 22747683
6 151988829 rs6913799 Breast size (bra cup size in women) 8.63E-07 22747683
6 152129588 rs6914438 Breast cancer 2.13E-04 22228098
6 151977085 rs6915267 Breast size (bra cup size in women) 1.42E-07 22747683
6 151925887 rs6915274 Breast size (bra cup size in women) 9.37E-06 22747683
6 151947539 rs6917575 Breast size (bra cup size in women) 1.41E-09 22747683
6 106827917 rs6919090 Breast cancer total mortality 1.40E-04 22232737
6 11409387 rs6919269 Gene expression of NEDD9 (probeID ILMN_1758719) in breast tumors 4.34E-04 22522925
6 77384675 rs6919990 Breast cancer risk (in BRCA1 mutation carriers) 2.90E-05 20852631
6 152131321 rs6920483 Breast cancer 6.25E-04 22228098
6 149562876 rs6923382 Breast cancer 2.20E-04 22228098
6 151936677 rs6929137 Breast size (bra cup size in women) 1.93E-06 22747683
6 149813737 rs6929614 Breast cancer 8.63E-04 22228098
6 31522669 rs6929796 Gene expression of LST1 (probeID ILMN_1718936) in breast tumors 6.05E-28 22522925
6 151958091 rs6930633 Breast size (bra cup size in women) 7.02E-08 22747683
6 151939560 rs6932260 Breast size (bra cup size in women) 1.09E-05 22747683
6 26355283 rs6933583 Gene expression of BTN3A2 (probeID ILMN_1676528) in breast tumors 3.77E-06 22522925
6 149566825 rs6935566 Breast cancer 1.98E-04 22228098
6 10785263 rs6936890 Gene expression of MAK (probeID ILMN_2209115) in breast tumors 1.13E-41 22522925
6 11213347 rs6937575 Gene expression of NEDD9 (probeID ILMN_1743619) in breast tumors 2.19E-04 22522925
6 32831247 rs6938130 Gene expression of PSMB9 (probeID ILMN_1798233) in breast tumors 2.07E-17 22522925
6 43608386 rs7106 Gene expression of MAD2L1BP (probeID ILMN_1694711) in breast tumors 1.74E-29 22522925
6 151978439 rs712219 Breast size (bra cup size in women) 4.30E-06 22747683
6 151876256 rs71549128 Breast cancer 2.48E-04 22228098
6 151876260 rs71549129 Breast cancer 2.65E-04 22228098
6 151943302 rs72501739 Breast cancer 2.30E-06 22228098
6 151922064 rs7349925 Breast size (bra cup size in women) 1.09E-05 22747683
6 50367363 rs73737604 Breast size (bra cup size in women) 5.88E-05 22747683
6 50343554 rs73739866 Breast size (bra cup size in women) 3.58E-05 22747683
6 50359708 rs73739875 Breast size (bra cup size in women) 4.71E-05 22747683
6 151947757 rs74295874 Breast size (bra cup size in women) 1.18E-09 22747683
6 151993723 rs74431386 Breast cancer 1.50E-05 22228098
6 88576539 rs7450514 Gene expression of DPM1 (probeID ILMN_2105308) in breast tumors 1.87E-04 22522925
6 88576539 rs7450514 Gene expression of RAE1 (probeID ILMN_1781454) in breast tumors 6.35E-04 22522925
6 88576539 rs7450514 Gene expression of STX16 (probeID ILMN_1741942) in breast tumors 6.52E-04 22522925
6 69115325 rs74590603 Breast size (bra cup size in women) 3.01E-05 22747683
6 50164812 rs74629670 Breast size (bra cup size in women) 8.08E-06 22747683
6 151977268 rs74728399 Breast cancer 6.70E-06 22228098
6 50374571 rs75235348 Breast size (bra cup size in women) 7.14E-05 22747683
6 50180549 rs75244472 Breast size (bra cup size in women) 7.76E-06 22747683
6 151839433 rs75318086 Breast cancer 2.79E-04 22228098
6 50088027 rs75511977 Breast size (bra cup size in women) 1.54E-05 22747683
6 151991750 rs75770678 Breast cancer 2.70E-05 22228098
6 151935539 rs75859313 Breast size (bra cup size in women) 5.71E-08 22747683
6 151932577 rs75988489 Breast size (bra cup size in women) 3.05E-07 22747683
6 149855742 rs761617 Breast cancer 1.87E-04 22228098
6 50150047 rs76204557 Breast size (bra cup size in women) 7.98E-06 22747683
6 50160256 rs76207107 Breast size (bra cup size in women) 8.46E-06 22747683
6 50084170 rs76307249 Breast size (bra cup size in women) 1.56E-05 22747683
6 50127823 rs76354493 Breast size (bra cup size in women) 1.45E-05 22747683
6 50068259 rs76525928 Breast size (bra cup size in women) 2.52E-05 22747683
6 50202617 rs76529620 Breast size (bra cup size in women) 5.26E-06 22747683
6 50350303 rs76902113 Breast size (bra cup size in women) 4.63E-05 22747683
6 50100179 rs77052606 Breast size (bra cup size in women) 2.18E-05 22747683
6 151969198 rs77275268 Breast size (bra cup size in women) 6.26E-10 22747683
6 151982879 rs77315705 Breast cancer 9.60E-06 22228098
6 151929669 rs77334499 Breast size (bra cup size in women) 7.05E-07 22747683
6 50084112 rs77345935 Breast size (bra cup size in women) 1.60E-05 22747683
6 151655623 rs77354896 Breast cancer 1.88E-04 22228098
6 30887344 rs7738138 Gene expression of VARS2 (probeID ILMN_1737585) in breast tumors 3.96E-13 22522925
6 30887344 rs7738138 Breast cancer 7.20E-04 23555315
6 7601776 rs7739209 Gene expression of C6ORF151 (probeID ILMN_1754304) in breast tumors 1.88E-42 22522925
6 151876252 rs7740522 Breast cancer 9.15E-04 22228098
6 151948173 rs7740686 Breast size (bra cup size in women) 2.46E-07 22747683
6 151893946 rs7741872 Breast cancer 6.80E-05 22228098
6 151987806 rs7745737 Breast size (bra cup size in women) 1.09E-07 22747683
6 150847808 rs7745789 Breast cancer (Estrogen receptor negative breast cancer) 1.42E-05 22976474
6 31895973 rs7746553 Breast cancer (ER positive) 2.70E-04 23555315
6 31895973 rs7746553 Breast cancer 8.40E-04 23555315
6 151928342 rs7746854 Breast size (bra cup size in women) 9.02E-06 22747683
6 149565986 rs7747474 Breast cancer 3.00E-05 22228098
6 130756710 rs77480604 Breast size (bra cup size in women) 5.96E-05 22747683
6 69291365 rs7748176 Breast size (bra cup size in women) 5.73E-05 22747683
6 151900657 rs7749563 Breast cancer 3.40E-05 22228098
6 151947068 rs7752591 Breast size (bra cup size in women) 9.49E-06 22747683
6 115191061 rs7752978 Gene expression of LOC90586 (probeID ILMN_1661052) in breast tumors 8.61E-04 22522925
6 149817319 rs7753560 Breast cancer 8.18E-04 22228098
6 53591120 rs7756654 Gene expression of HS.136841 (probeID ILMN_1911040) in breast tumors 7.23E-34 22522925
6 152007587 rs7756917 Breast size (bra cup size in women) 6.27E-05 22747683
6 50227385 rs77569633 Breast size (bra cup size in women) 9.61E-06 22747683
6 105378954 rs7759938 Puberty onset (breast development) 5.60E-07 24770850
6 151924379 rs7762097 Breast size (bra cup size in women) 1.08E-05 22747683
6 82279237 rs7763102 Breast cancer (Estrogen receptor negative breast cancer) 3.86E-05 22976474
6 151949312 rs7763637 Breast size (bra cup size in women) 2.17E-07 22747683
6 150835885 rs7764084 Breast cancer (Estrogen receptor negative breast cancer) 1.06E-05 22976474
6 50082102 rs7764125 Breast size (bra cup size in women) 2.75E-05 22747683
6 151993715 rs77668774 Breast cancer 1.60E-05 22228098
6 118541407 rs7768436 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
6 152145916 rs7771894 Breast cancer 1.42E-04 22228098
6 149820799 rs7774559 Breast cancer 7.07E-04 22228098
6 151950723 rs7774781 Breast size (bra cup size in women) 1.73E-09 22747683
6 151983383 rs77758681 Breast cancer 9.60E-06 22228098
6 127638348 rs7776136 Breast cancer 6.60E-08 18326623
6 151668244 rs7776145 Breast cancer 1.52E-04 22228098
6 151945666 rs7776340 Breast cancer 1.40E-08 22383897
6 151945666 rs7776340 Breast size (bra cup size in women) 6.48E-06 22747683
6 151845594 rs77942641 Breast cancer 2.31E-04 22228098
6 50221478 rs78078435 Breast size (bra cup size in women) 9.98E-06 22747683
6 124977655 rs781484 Breast cancer 1.83E-04 pha002853
6 151975565 rs78177662 Breast cancer 6.00E-06 22228098
6 149836320 rs78296717 Breast cancer 3.30E-04 22228098
6 50219555 rs78439642 Breast size (bra cup size in women) 1.37E-05 22747683
6 151985574 rs78517863 Breast size (bra cup size in women) 2.36E-08 22747683
6 50190214 rs78548738 Breast size (bra cup size in women) 1.50E-05 22747683
6 50086141 rs78680513 Breast size (bra cup size in women) 1.54E-05 22747683
6 151974492 rs78841457 Breast cancer 8.10E-06 22228098
6 50093646 rs78900348 Breast size (bra cup size in women) 9.11E-06 22747683
6 50154288 rs79034036 Breast size (bra cup size in women) 7.65E-06 22747683
6 50113999 rs79237282 Breast size (bra cup size in women) 1.81E-05 22747683
6 50367719 rs79372457 Breast size (bra cup size in women) 9.91E-05 22747683
6 151925719 rs79416523 Breast size (bra cup size in women) 7.47E-07 22747683
6 151922622 rs79475117 Breast size (bra cup size in women) 5.33E-08 22747683
6 151937679 rs79692348 Breast cancer 2.10E-06 22228098
6 151840638 rs79699315 Breast cancer 2.51E-04 22228098
6 50109806 rs79883796 Breast size (bra cup size in women) 1.84E-05 22747683
6 50166437 rs79980048 Breast size (bra cup size in women) 8.10E-06 22747683
6 152123593 rs79994281 Breast cancer 2.44E-04 22228098
6 50183584 rs80075701 Breast size (bra cup size in women) 4.26E-05 22747683
6 50365219 rs80271509 Breast size (bra cup size in women) 5.78E-05 22747683
6 152035710 rs8180576 Breast cancer 1.50E-05 22228098
6 151981210 rs851966 Breast size (bra cup size in women) 2.79E-07 22747683
6 151979157 rs851970 Breast size (bra cup size in women) 4.56E-06 22747683
6 151971687 rs851974 Breast size (bra cup size in women) 1.30E-06 22747683
6 152024985 rs851982 Breast cancer 8.90E-05 22228098
6 152024415 rs851983 Breast cancer 4.60E-05 22228098
6 152023191 rs851984 Breast cancer 7.20E-05 22228098
6 152020390 rs851985 Breast cancer 5.40E-05 22228098
6 151985550 rs851997 Breast size (bra cup size in women) 9.08E-06 22747683
6 151962202 rs852003 Breast size (bra cup size in women) 2.15E-08 22747683
6 37002271 rs864396 Gene expression of FGD2 (probeID ILMN_2115005) in breast tumors 4.61E-11 22522925
6 151963697 rs865898 Breast size (bra cup size in women) 2.66E-08 22747683
6 151982413 rs866457 Breast size (bra cup size in women) 2.43E-07 22747683
6 152128631 rs867239 Breast cancer 5.68E-04 22228098
6 151925377 rs900195 Breast size (bra cup size in women) 3.65E-06 22747683
6 152432902 rs910416 Breast cancer (Estrogen receptor negative breast cancer) 3.06E-05 22976474
6 28754520 rs9257181 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 4.90E-05 24325915
6 29733123 rs9258278 Breast size (bra cup size in women) 7.36E-05 22747683
6 30019654 rs9261250 Breast size (bra cup size in women) 5.84E-05 22747683
6 32429643 rs9268853 Gene expression of HLA-DRB3 (probeID ILMN_1717261) in breast tumors 1.86E-22 22522925
6 32574060 rs9270986 Gene expression of HLA-DRB5 (probeID ILMN_1697499) in breast tumors 8.71E-37 22522925
6 32609427 rs9272723 Gene expression of HLA-DRB1 (probeID ILMN_1715169) in breast tumors 1.81E-94 22522925
6 33055247 rs9277542 Gene expression of HLA-DPB1 (probeID ILMN_1749070) in breast tumors 1.91E-36 22522925
6 33352360 rs9278036 Gene expression of PHF1 (probeID ILMN_2385866) in breast tumors 5.62E-10 22522925
6 20468635 rs9295471 Gene expression of CALM2 (probeID ILMN_1687858) in breast tumors 8.41E-05 22522925
6 111983818 rs9320374 Breast cancer 2.90E-05 22452962
6 120312329 rs9320730 Breast cancer 2.19E-04 pha002853
6 149845266 rs9322184 Breast cancer 9.50E-04 22228098
6 152073318 rs9322330 Breast cancer 2.39E-04 22228098
6 82198185 rs9344191 Breast cancer (Estrogen receptor negative breast cancer) 8.13E-05 22976474
6 82238322 rs9344194 Breast cancer (Estrogen receptor negative breast cancer) 4.03E-05 22976474
6 82325529 rs9344208 Breast cancer (Estrogen receptor negative breast cancer) 2.41E-06 22976474
6 82346997 rs9344210 Breast cancer (Estrogen receptor negative breast cancer) 9.38E-05 22976474
6 82349815 rs9344211 Breast cancer (Estrogen receptor negative breast cancer) 3.64E-05 22976474
6 167271460 rs9348198 Gene expression of RPS6KA2 (probeID ILMN_1716218) in breast tumors 7.33E-123 22522925
6 27002406 rs9348747 Gene expression of ABT1 (probeID ILMN_1658083) in breast tumors 4.75E-06 22522925
6 26362705 rs9358932 Gene expression of BTN3A2 (probeID ILMN_1700067) in breast tumors 3.33E-18 22522925
6 88095500 rs9359748 Breast cancer 4.20E-04 21908515
6 151858598 rs9371220 Breast cancer 6.95E-04 22228098
6 151885986 rs9371221 Breast cancer 3.07E-04 22228098
6 151943453 rs9371225 Breast size (bra cup size in women) 1.94E-06 22747683
6 151986594 rs9371226 Breast size (bra cup size in women) 9.24E-08 22747683
6 151808248 rs9371522 Breast cancer 6.05E-04 22228098
6 151847849 rs9371531 Breast cancer 8.14E-04 22228098
6 151872500 rs9371537 Breast cancer 6.27E-04 22228098
6 151872963 rs9371538 Breast cancer 6.34E-04 22228098
6 150217360 rs9371544 Gene expression of NUP43 (probeID ILMN_1661432) in breast tumors 1.87E-07 22522925
6 151969740 rs9371545 Breast size (bra cup size in women) 9.30E-10 22747683
6 151982089 rs9371547 Breast size (bra cup size in women) 5.88E-08 22747683
6 152082646 rs9371551 Breast cancer 6.55E-04 22228098
6 149834574 rs9373594 Breast cancer 4.26E-04 22228098
6 149873490 rs9373595 Breast cancer 2.36E-04 22228098
6 149881823 rs9373596 Breast cancer 9.46E-04 22228098
6 149821744 rs9377220 Breast cancer 2.41E-04 22228098
6 149821755 rs9377221 Breast cancer 2.50E-04 22228098
6 149822006 rs9377222 Breast cancer 2.40E-04 22228098
6 149832751 rs9377223 Breast cancer 7.61E-04 22228098
6 149853707 rs9377224 Breast cancer 2.65E-04 22228098
6 36853543 rs9380618 Breast cancer (BRCA2-positive) 2.01E-05 21060860
6 41570350 rs9381084 Gene expression of CD27 (probeID ILMN_1688959) in breast tumors 8.93E-05 22522925
6 41570350 rs9381084 Gene expression of CD3D (probeID ILMN_2325837) in breast tumors 3.07E-04 22522925
6 41570350 rs9381084 Gene expression of CST7 (probeID ILMN_1679826) in breast tumors 4.52E-04 22522925
6 151873358 rs9383581 Breast cancer 6.79E-04 22228098
6 151940260 rs9383589 Breast size (bra cup size in women) 2.22E-08 22747683
6 151940260 rs9383589 Breast cancer (Estrogen receptor negative breast cancer) 6.91E-06 22976474
6 151953765 rs9383590 Breast size (bra cup size in women) 3.69E-10 22747683
6 152027012 rs9383591 Breast cancer 1.10E-05 22228098
6 151846821 rs9383917 Breast cancer 7.82E-04 22228098
6 151875067 rs9383924 Breast cancer 3.35E-04 22228098
6 151896937 rs9383928 Breast cancer 2.90E-05 22228098
6 151939848 rs9383935 Breast size (bra cup size in women) 1.08E-08 22747683
6 151939848 rs9383935 Breast cancer (Estrogen receptor negative breast cancer) 1.32E-05 22976474
6 151944614 rs9383936 Breast size (bra cup size in women) 2.17E-09 22747683
6 151944614 rs9383936 Breast cancer (Estrogen receptor negative breast cancer) 1.26E-05 22976474
6 151957119 rs9383937 Breast size (bra cup size in women) 2.66E-10 22747683
6 151987357 rs9383938 Breast cancer 2.00E-10 22976474
6 151987357 rs9383938 Breast cancer (Estrogen receptor negative breast cancer) 8.75E-08 22976474
6 151987357 rs9383938 Breast cancer 1.41E-07 21263130
6 151987357 rs9383938 Breast size (bra cup size in women) 1.84E-07 22747683
6 152006178 rs9383939 Breast size (bra cup size in women) 3.34E-05 22747683
6 152295613 rs9383951 Breast cancer (Estrogen receptor positive breast cancer) 7.80E-07 22383897
6 152295613 rs9383951 Breast cancer 1.90E-06 22383897
6 152295613 rs9383951 Breast cancer 2.00E-06 22383897
6 152295613 rs9383951 Breast cancer (Progesterone receptor positive breast cancer) 1.30E-05 22383897
6 152295613 rs9383951 Breast cancer (Postmenopausal women) 1.60E-05 22383897
6 152295613 rs9383951 Breast cancer (Progesterone receptor negative breast cancer) 9.80E-05 22383897
6 152295613 rs9383951 Breast cancer (BM 5.80E-04 22383897
6 109955061 rs9386828 Gene expression of C6ORF224 (probeID ILMN_1687835) in breast tumors 3.90E-07 22522925
6 149822009 rs9390684 Breast cancer 2.39E-04 22228098
6 149850806 rs9390687 Breast cancer 3.34E-04 22228098
6 149874941 rs9390689 Breast cancer 2.78E-04 22228098
6 105367616 rs9391253 Puberty onset (breast development) 3.00E-07 24770850
6 3307863 rs9391988 Breast cancer 1.20E-04 21908515
6 3366819 rs9392487 Breast cancer 9.00E-05 19219042
6 9095364 rs9393089 Breast cancer risk (in BRCA1 mutation carriers) 1.17E-04 20852631
6 28207200 rs9393909 Gene expression of HS.120653 (probeID ILMN_1853032) in breast tumors 3.66E-04 22522925
6 38964249 rs9394567 Gene expression of BAT1 (probeID ILMN_1686626) in breast tumors 4.54E-04 22522925
6 151914951 rs9397064 Breast cancer 1.90E-05 22228098
6 151953859 rs9397068 Breast size (bra cup size in women) 4.78E-10 22747683
6 151980707 rs9397069 Breast size (bra cup size in women) 8.69E-08 22747683
6 151872791 rs9397424 Breast cancer 6.27E-04 22228098
6 151873024 rs9397425 Breast cancer 5.88E-04 22228098
6 151875034 rs9397427 Breast cancer 3.36E-04 22228098
6 151875080 rs9397428 Breast cancer 2.85E-04 22228098
6 151877569 rs9397429 Breast cancer 3.15E-04 22228098
6 151883930 rs9397431 Breast cancer 3.22E-04 22228098
6 151916855 rs9397432 Breast cancer 3.70E-06 22228098
6 151919432 rs9397433 Breast cancer 1.29E-04 22228098
6 151951220 rs9397435 Breast size (bra cup size in women) 1.14E-09 22747683
6 151952002 rs9397436 Breast size (bra cup size in women) 8.51E-11 22747683
6 151952332 rs9397437 Breast size (bra cup size in women) 1.91E-10 22747683
6 151978802 rs9397440 Breast size (bra cup size in women) 3.50E-07 22747683
6 151982315 rs9397441 Breast size (bra cup size in women) 4.93E-08 22747683
6 151986003 rs9397442 Breast size (bra cup size in women) 1.72E-08 22747683
6 152067500 rs9397445 Breast cancer 1.24E-04 22228098
6 149874177 rs9399690 Breast cancer 2.74E-04 22228098
6 117700729 rs9401001 Gene expression of HS.584425 (probeID ILMN_1884572) in breast tumors 5.20E-05 22522925
6 149866452 rs9404042 Breast cancer 9.25E-04 22228098
6 149871948 rs9404043 Breast cancer 9.27E-04 22228098
6 149873067 rs9404044 Breast cancer 2.73E-04 22228098
6 2997544 rs9405188 Gene expression of NQO2 (probeID ILMN_1712918) in breast tumors 6.00E-05 22522925
6 149861604 rs9406344 Breast cancer 1.84E-04 22228098
6 82224962 rs9449341 Breast cancer (Estrogen receptor negative breast cancer) 6.34E-05 22976474
6 82329512 rs9449357 Breast cancer (Estrogen receptor negative breast cancer) 6.14E-05 22976474
6 67947988 rs9454109 Breast cancer risk (in BRCA1 mutation carriers) 1.14E-06 20852631
6 164384219 rs9456909 Breast cancer (hormonal receptor positive breast cancer) 1.59E-05 22951594
6 49380899 rs9463475 Gene expression of MUT (probeID ILMN_1785113) in breast tumors 1.40E-16 22522925
6 21901658 rs9466206 Breast cancer 1.96E-04 21263130
6 54825477 rs9475086 Gene expression of TM2D2 (probeID ILMN_1741171) in breast tumors 1.85E-09 22522925
6 151989300 rs9479090 Breast size (bra cup size in women) 2.34E-07 22747683
6 151989609 rs9479091 Breast size (bra cup size in women) 9.94E-08 22747683
6 151992984 rs9479093 Breast cancer 1.80E-05 22228098
6 152004211 rs9479098 Breast size (bra cup size in women) 2.38E-05 22747683
6 152082973 rs9479107 Breast cancer 7.87E-04 22228098
6 152140867 rs9479121 Breast cancer 7.39E-04 22228098
6 152140940 rs9479122 Breast cancer 7.04E-04 22228098
6 152146580 rs9479126 Breast cancer 4.73E-04 22228098
6 149608874 rs9485372 Breast cancer 8.20E-13 22383897
6 149608874 rs9485372 Breast cancer 4.00E-12 22383897
6 149608874 rs9485372 Breast cancer (Estrogen receptor positive breast cancer) 3.70E-06 22383897
6 149608874 rs9485372 Breast cancer (Progesterone receptor positive breast cancer) 2.50E-05 22383897
6 149608874 rs9485372 Breast cancer risk (Premenopausal women) 1.60E-04 22383897
6 133135807 rs9493450 Gene expression of LOC651894 (probeID ILMN_1679920) in breast tumors 1.15E-105 22522925
6 147111729 rs9497624 Breast cancer risk (in BRCA1 mutation carriers) 8.73E-05 20852631
6 149568194 rs9498267 Breast cancer 1.97E-04 22228098
6 149605182 rs9498283 Breast cancer 5.30E-06 22452962
6 151887150 rs958283 Breast cancer 3.09E-04 22228098
6 149852038 rs9689569 Breast cancer 3.38E-04 22228098
6 151876909 rs975459 Breast cancer 3.37E-04 22228098
6 149849132 rs9800648 Breast cancer 3.30E-04 22228098
6 42942779 rs9986447 Gene expression of PEX6 (probeID ILMN_1683279) in breast tumors 6.43E-29 22522925
6 82522971 rs999567 Breast cancer 2.49E-05 24143190
Chr Position SNPID Disease/Trait name pvalue PMID

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